BrainBase a curated knowledgebase for brain diseases

Sample ID Gene Symbol Glioma Grade Chr Start Site End Site RET ALT Amino Acid Change Effect Filter DNA VAF
TCGA-12-0691-01A IL12RB2 GBM chr1 67329710 67329710 A G p.N263S missense_variant PASS 0.339055794
TCGA-12-0691-01A CHRNB2 GBM chr1 154571760 154571760 G A p.V313I missense_variant PASS 0.428571429
TCGA-12-0691-01A UBQLN4 GBM chr1 156042792 156042792 G T p.N416K missense_variant PASS 0.413793103
TCGA-12-0691-01A FCRL3 GBM chr1 157698601 157698601 G A p.L27L synonymous_variant PASS 0.380208333
TCGA-12-0691-01A STYXL2 GBM chr1 167126248 167126248 C T p.R373C missense_variant PASS 0.375
TCGA-12-0691-01A SELE GBM chr1 169732953 169732953 G A p.T28M missense_variant PASS 0.39869281
TCGA-12-0691-01A CFH GBM chr1 196652095 196652095 T C 5_prime_UTR_variant PASS 0.416666667
TCGA-12-0691-01A GOLGA4 GBM chr3 37324689 37324689 G C p.E935Q missense_variant PASS 0.352657005
TCGA-12-0691-01A COL8A1 GBM chr3 99795944 99795944 C T p.N681N synonymous_variant PASS 0.131578947
TCGA-12-0691-01A PPEF2 GBM chr4 75860859 75860859 G A p.I690I synonymous_variant PASS 0.421777222