BrainBase a curated knowledgebase for brain diseases

  • Home
  • Variation
    • Sample ID Gene Symbol Glioma Grade Chr Start Site End Site RET ALT Amino Acid Change Effect Filter DNA VAF
    TCGA-06-2565-01A PRAMEF14 GBM chr1 13344429 13344429 G A p.P159S missense_variant PASS 0.432276657
    TCGA-06-2565-01A LRRC40 GBM chr1 70145899 70145899 T C p.L570L synonymous_variant PASS 0.525641026
    TCGA-06-2565-01A IQGAP3 GBM chr1 156528030 156528030 C T p.P1568P synonymous_variant PASS 0.339622642
    TCGA-06-2565-01A CACNA1S GBM chr1 201059241 201059241 G A p.T1158I missense_variant PASS 0.407407407
    TCGA-06-2565-01A TRIM58 GBM chr1 247864729 247864729 C T p.R181C missense_variant PASS 0.346153846
    TCGA-06-2565-01A GALNT14 GBM chr2 30955704 30955704 C T p.A190T missense_variant PASS 0.416666667
    TCGA-06-2565-01A ZAP70 GBM chr2 97734669 97734669 G A p.G347S missense_variant PASS 0.541935484
    TCGA-06-2565-01A GCC2 GBM chr2 108475577 108475577 A G p.N968S missense_variant PASS 0.387096774
    TCGA-06-2565-01A COL6A3 GBM chr2 237336232 237336233 AG - p.A2956Gfs*12 frameshift_variant PASS 0.252631579
    TCGA-06-2565-01A COL6A3 GBM chr2 237336234 237336234 C G p.A2956P missense_variant PASS 0.304347826