BrainBase a curated knowledgebase for brain diseases

Sample ID Gene Symbol Glioma Grade Chr Start Site End Site RET ALT Amino Acid Change Effect Filter DNA VAF
TCGA-06-0157-01A SLC25A34 GBM chr1 15739489 15739489 G A 3_prime_UTR_variant PASS 0.518518519
TCGA-06-0157-01A SPTA1 GBM chr1 158615381 158615381 G A p.A2208V missense_variant PASS 0.371308017
TCGA-06-0157-01A SERPINC1 GBM chr1 173909586 173909586 G A p.V373V synonymous_variant PASS 0.408536585
TCGA-06-0157-01A SYT2 GBM chr1 202596944 202596944 G A p.T358I missense_variant PASS 0.423423423
TCGA-06-0157-01A HSD11B1 GBM chr1 209734396 209734396 C T p.R252C missense_variant PASS 0.407407407
TCGA-06-0157-01A RYR2 GBM chr1 237614326 237614326 C T p.T1733M missense_variant PASS 0.345454545
TCGA-06-0157-01A SNRNP200 GBM chr2 96298400 96298400 C T p.A335T missense_variant PASS 0.367816092
TCGA-06-0157-01A TBR1 GBM chr2 161423493 161423493 A G p.N439D missense_variant PASS 0.3125
TCGA-06-0157-01A TTN GBM chr2 178677906 178677906 G A p.R11019C missense_variant PASS 0.120967742
TCGA-06-0157-01A PDE1A GBM chr2 182189039 182189039 C T p.G399R missense_variant PASS 0.41958042