BrainBase
a curated knowledgebase for brain diseases
Sample ID |
Gene Symbol |
Glioma Grade |
Chr |
Start Site |
End Site |
RET |
ALT |
Amino Acid Change |
Effect |
Filter |
DNA VAF |
TCGA-06-0157-01A |
SLC25A34 |
GBM |
chr1 |
15739489 |
15739489 |
G |
A |
|
3_prime_UTR_variant |
PASS |
0.518518519 |
TCGA-06-0157-01A |
SPTA1 |
GBM |
chr1 |
158615381 |
158615381 |
G |
A |
p.A2208V |
missense_variant |
PASS |
0.371308017 |
TCGA-06-0157-01A |
SERPINC1 |
GBM |
chr1 |
173909586 |
173909586 |
G |
A |
p.V373V |
synonymous_variant |
PASS |
0.408536585 |
TCGA-06-0157-01A |
SYT2 |
GBM |
chr1 |
202596944 |
202596944 |
G |
A |
p.T358I |
missense_variant |
PASS |
0.423423423 |
TCGA-06-0157-01A |
HSD11B1 |
GBM |
chr1 |
209734396 |
209734396 |
C |
T |
p.R252C |
missense_variant |
PASS |
0.407407407 |
TCGA-06-0157-01A |
RYR2 |
GBM |
chr1 |
237614326 |
237614326 |
C |
T |
p.T1733M |
missense_variant |
PASS |
0.345454545 |
TCGA-06-0157-01A |
SNRNP200 |
GBM |
chr2 |
96298400 |
96298400 |
C |
T |
p.A335T |
missense_variant |
PASS |
0.367816092 |
TCGA-06-0157-01A |
TBR1 |
GBM |
chr2 |
161423493 |
161423493 |
A |
G |
p.N439D |
missense_variant |
PASS |
0.3125 |
TCGA-06-0157-01A |
TTN |
GBM |
chr2 |
178677906 |
178677906 |
G |
A |
p.R11019C |
missense_variant |
PASS |
0.120967742 |
TCGA-06-0157-01A |
PDE1A |
GBM |
chr2 |
182189039 |
182189039 |
C |
T |
p.G399R |
missense_variant |
PASS |
0.41958042 |