BrainBase
a curated knowledgebase for brain diseases
Sample ID |
Gene Symbol |
Glioma Grade |
Chr |
Start Site |
End Site |
RET |
ALT |
Amino Acid Change |
Effect |
Filter |
DNA VAF |
TCGA-06-0155-01B |
CLCNKB |
GBM |
chr1 |
16052256 |
16052256 |
C |
T |
p.F489F |
synonymous_variant |
PASS |
0.23 |
TCGA-06-0155-01B |
AP4B1 |
GBM |
chr1 |
113895906 |
113895906 |
G |
A |
p.P548L |
missense_variant |
PASS |
0.390909091 |
TCGA-06-0155-01B |
ANGPTL1 |
GBM |
chr1 |
178865236 |
178865236 |
A |
G |
p.S181P |
missense_variant |
PASS |
0.338345865 |
TCGA-06-0155-01B |
OBSCN |
GBM |
chr1 |
228243444 |
228243444 |
G |
T |
p.R1064L |
missense_variant |
PASS |
0.37254902 |
TCGA-06-0155-01B |
CHRM3 |
GBM |
chr1 |
239908935 |
239908935 |
C |
T |
p.A495V |
missense_variant |
PASS |
0.395 |
TCGA-06-0155-01B |
HNRNPU |
GBM |
chr1 |
244858746 |
244858748 |
CAT |
- |
p.D404del |
inframe_deletion |
PASS |
0.234042553 |
TCGA-06-0155-01B |
CAPN13 |
GBM |
chr2 |
30743503 |
30743503 |
C |
T |
p.R442H |
missense_variant |
PASS |
0.40192926 |
TCGA-06-0155-01B |
DYSF |
GBM |
chr2 |
71643981 |
71643981 |
A |
C |
p.D1476A |
missense_variant |
PASS |
0.352941176 |
TCGA-06-0155-01B |
NIFK |
GBM |
chr2 |
121730805 |
121730805 |
A |
G |
|
intron_variant |
PASS |
0.446808511 |
TCGA-06-0155-01B |
SCN9A |
GBM |
chr2 |
166228843 |
166228843 |
T |
A |
p.N1352Y |
missense_variant |
PASS |
0.360759494 |