BrainBase a curated knowledgebase for brain diseases

Sample ID Gene Symbol Glioma Grade Chr Start Site End Site RET ALT Amino Acid Change Effect Filter DNA VAF
TCGA-06-0154-01A CLCNKA GBM chr1 16028798 16028798 G A p.A336T missense_variant PASS 0.215873016
TCGA-06-0154-01A LRRC7 GBM chr1 70038288 70038288 A G p.T784A missense_variant PASS 0.271604938
TCGA-06-0154-01A MCOLN3 GBM chr1 85034227 85034227 C T p.V141I missense_variant PASS 0.354166667
TCGA-06-0154-01A SYT6 GBM chr1 114093775 114093775 C T 3_prime_UTR_variant PASS 0.276595745
TCGA-06-0154-01A MAB21L3 GBM chr1 116133204 116133204 C T p.R310C missense_variant PASS 0.292682927
TCGA-06-0154-01A FGFR1 GBM chr1 152310607 152310607 C T p.A1427T missense_variant PASS 0.34025974
TCGA-06-0154-01A F5 GBM chr1 169541325 169541325 C G p.Q1255H missense_variant PASS 0.30529595
TCGA-06-0154-01A RYR2 GBM chr1 237760981 237760981 G A p.R3810Q missense_variant PASS 0.444444444
TCGA-06-0154-01A POTEE GBM chr2 131263775 131263775 G A p.G774S missense_variant PASS 0.220472441
TCGA-06-0154-01A SCN7A GBM chr2 166470681 166470681 C A p.D200Y missense_variant PASS 0.242424242