BrainBase
a curated knowledgebase for brain diseases
Sample ID |
Gene Symbol |
Glioma Grade |
Chr |
Start Site |
End Site |
RET |
ALT |
Amino Acid Change |
Effect |
Filter |
DNA VAF |
TCGA-02-2466-01A |
EPHB2 |
GBM |
chr1 |
22913494 |
22913494 |
G |
A |
p.G962D |
missense_variant |
PASS |
0.269230769 |
TCGA-02-2466-01A |
SYTL1 |
GBM |
chr1 |
27350849 |
27350850 |
- |
C |
p.R355Pfs*14 |
frameshift_variant |
PASS |
0.293103448 |
TCGA-02-2466-01A |
TMEM53 |
GBM |
chr1 |
44655133 |
44655133 |
C |
T |
p.R87H |
missense_variant |
PASS |
0.447368421 |
TCGA-02-2466-01A |
TAL1 |
GBM |
chr1 |
47219817 |
47219817 |
C |
T |
p.S300N |
missense_variant |
PASS |
0.476190476 |
TCGA-02-2466-01A |
DAB1 |
GBM |
chr1 |
57026017 |
57026017 |
C |
A |
p.G283G |
synonymous_variant |
PASS |
0.554726368 |
TCGA-02-2466-01A |
C1orf141 |
GBM |
chr1 |
67093367 |
67093367 |
G |
C |
p.Q281E |
missense_variant |
PASS |
0.455223881 |
TCGA-02-2466-01A |
COL24A1 |
GBM |
chr1 |
86022555 |
86022555 |
C |
T |
p.G729R |
missense_variant |
PASS |
0.157142857 |
TCGA-02-2466-01A |
CLCA1 |
GBM |
chr1 |
86491326 |
86491326 |
G |
A |
p.G473G |
synonymous_variant |
PASS |
0.494117647 |
TCGA-02-2466-01A |
ITGA10 |
GBM |
chr1 |
145902284 |
145902284 |
C |
A |
p.E371* |
stop_gained |
PASS |
0.136094675 |
TCGA-02-2466-01A |
FGFR1 |
GBM |
chr1 |
152307841 |
152307841 |
C |
T |
p.G2349R |
missense_variant |
PASS |
0.511346445 |