National Genomics Data Center

BIG Search

BIG Search is a scalable text search engine built based on ElasticSearch (a highly scalable open-source full-text search and analytics engine based on Apache Lucene). It features cross-domain search and facilitates users to gain access to a wide range of biomedical data, not only from BIGD databases but also partner databases throughout the world.

e.g., PRJCA000126;SAMC000385;tp53;EGFR; human; KaKs_Calculator; GenBank

Total 3925 record(s) from 2019nCoVR Literature

Publication: Identification of coronavirus sequences in carp cDNA from Wuhan, China.
abst: the research and submitted the cDNA libraries to GenBank. This institution is very close in
basicInfo: the research and submitted the cDNA libraries to GenBank. This institution is very close in
Publication: The first two cases of 2019-nCoV in Italy: Where they come from?
abst: related bat strains (SARS-like CoV) available in GenBank. Bayesian time-scaled phylogenetic analysis was
basicInfo: related bat strains (SARS-like CoV) available in GenBank. Bayesian time-scaled phylogenetic analysis was
Publication: RNA based mNGS approach identifies a novel human coronavirus from two individual pneumonia cases in 2019 Wuhan outbreak.
abst: level (1.5% and 0.62% of total RNA sequenced). The entire viral genome is 29,881 nt in length (GenBank, partial RdRp gene of bat coronavirus strain BtCoV/4991 (GenBank KP876546, 370 nt sequence of RdRp and lack
basicInfo: level (1.5% and 0.62% of total RNA sequenced). The entire viral genome is 29,881 nt in length (GenBank, partial RdRp gene of bat coronavirus strain BtCoV/4991 (GenBank KP876546, 370 nt sequence of RdRp and lack
Publication: Whole Genome Sequence Analysis and Homology Modelling of a 3C Like Peptidase and a Non-Structural Protein 3 of the SARS-CoV-2 Shows Protein Ligand Interaction with an Aza-Peptide and a Noncovalent Lead Inhibitor with Possible Antiviral Properties
abst: ) of the SARS-CoV-2 virus isolate Wuhan-Hu-1 (Genbank Accession Number MN908947.3) when modelled
basicInfo: ) of the SARS-CoV-2 virus isolate Wuhan-Hu-1 (Genbank Accession Number MN908947.3) when modelled
Publication: Sars-CoV-2 Envelope and Membrane Proteins: Differences from Closely Related Proteins Linked to Cross-species Transmission?
abst: Sars-CoV-2 isolates and other closely related virus were collected from the GenBank through TBlastN
basicInfo: Sars-CoV-2 isolates and other closely related virus were collected from the GenBank through TBlastN
Publication: Introductions and early spread of SARS-CoV-2 in France
publicationReviewList.researchSample: 测序97例法国北部不同地区来源的病人鼻咽或痰样本,和3例阿尔及利亚病人样本后,得到的100个 SARS-CoV-2序列数据,以及338个GenBank或GISAID数据库的公共发表的序列
Publication: Near-Complete Genome Sequence of a 2019 Novel Coronavirus (SARS-CoV-2) Strain Causing a COVID-19 Case in Peru.
publicationReviewList.hasGenomeData: 有基因组数据产出, GISAID: EPI_ISL_415787;GenBank:MT263074
Publication: COVID-19 Outbreak: An Overview.
abst: was released (http://viro-logical.org/t/novel-2019-coronavirus-genome/319; Wuhan-Hu-1, GenBank
basicInfo: was released (http://viro-logical.org/t/novel-2019-coronavirus-genome/319; Wuhan-Hu-1, GenBank
Publication: A virus that has gone viral: Amino acid mutation in S protein of Indian isolate of Coronavirus COVID-19 might impact receptor binding and thus infectivity
abst: deposited in GenBank. We have performed sequence analyses of the spike protein of the Indian isolates and
basicInfo: deposited in GenBank. We have performed sequence analyses of the spike protein of the Indian isolates and
Publication: Phylogenetic Analysis of the Novel Coronavirus Reveals Important Variants in Indian Strains
abst: 440 collective genome sequences of virus submitted in GenBank, GISAID, and SRA projects, from
basicInfo: 440 collective genome sequences of virus submitted in GenBank, GISAID, and SRA projects, from