Biological Wikis
| Name | Description | Availability | MediaWiki-based | Reference | Powered By AuthorReward |
|---|---|---|---|---|---|
| 959 Nematode Genomes | A semantic wiki for coordinating sequencing projects | http://www.nematodegenomes.org | Yes | [1] | No |
| ArrayWiki | A community-maintained system for sharing public microarray data repositories and meta-analyses | http://arraywiki.bme.gatech.edu | Yes | [2] | No |
| BOWiki | An ontology-based wiki for annotation of data and integration of knowledge | http://www.bowiki.net | No | [3] | No |
| EcoliWiki | A wiki-based community resource for Escherichia coli | http://ecoliwiki.net | Yes | [4] | No |
| ESND | A wiki-based English-to-Chinese scientific nomenclature dictionary | http://esnd.big.ac.cn | Yes | [5] | No |
| Gene Wiki | A wiki harnessing community intelligence to the annotation of human gene and protein function | http://en.wikipedia.org/wiki/Portal:Gene_Wiki | Yes | [6] | No |
| GONUTS | A community-based browser and usage guide for Gene Ontology (GO) terms and a community system for general GO annotation of proteins | http://gowiki.tamu.edu | Yes | [7] | No |
| MetaBase | A community-curated database of commonly used biological databases | http://www.metadatabase.org | Yes | [8] | No |
| PDBWiki | A community annotated knowledge base of biological molecular structures | http://www.pdbwiki.org | Yes | [9] | No |
| Proteopedia | A scientific wiki bridging the rift between three-dimensional structure and function of biomacromolecules | http://www.proteopedia.org | Yes | [10] | No |
| Rfam | A community-derived annotation of RNA families | http://rfam.sanger.ac.uk | Yes | [11] | No |
| RiceWiki | A wiki-based, publicly editable and open-content platform for community annotation of rice genes | http://ricewiki.big.ac.cn | Yes | Submitted | Yes |
| SEQanswers Wiki | A wiki database of tools for high-throughput sequencing analysis | http://wiki.SEQanswers.com | Yes | [12] | No |
| SNPedia | A wiki supporting personal genome annotation, interpretation and analysis | http://www.snpedia.com | Yes | [13] | No |
| SubtiWiki | A comprehensive community resource for the model organism Bacillus subtilis | http://subtiwiki.uni-goettingen.de/wiki/index.php/Main_Page | Yes | [14] | No |
| Transdab Wiki | A wiki database of transglutaminase substrate proteins | http://genomics.dote.hu/wiki | Yes | [15] | No |
| WikiCell | A unified resource platform for human transcriptomics research | http://www.wikicell.org | Yes | [16] | No |
| WikiGenes | A collaborative knowledge resource for the life sciences | http://www.wikigenes.org | No | [17] | No |
| WikiPathways | An open, public platform dedicated to the curation of biological pathways | http://www.wikipathways.org | Yes | [18] | No |
| WikiProteins | A wiki-based system for community annotation of proteins | http://www.wikiprofessional.org | (Not available) | [19] | No |
References:
- Kumar S, Schiffer PH, Blaxter M. 959 Nematode Genomes: a semantic wiki for coordinating sequencing projects, Nucleic Acids Res 2012;40:D1295-1300.
- Stokes TH, Torrance JT, Li H et al. ArrayWiki: an enabling technology for sharing public microarray data repositories and meta-analyses, BMC Bioinformatics 2008;9 Suppl 6:S18.
- Hoehndorf R, Bacher J, Backhaus M et al. BOWiki: an ontology-based wiki for annotation of data and integration of knowledge in biology, BMC Bioinformatics 2009;10 Suppl 5:S5.
- McIntosh BK, Renfro DP, Knapp GS et al. EcoliWiki: a wiki-based community resource for Escherichia coli, Nucleic Acids Res 2012;40:D1270-1277.
- Dai L, Xu C, Tian M et al. Community intelligence in knowledge curation: an application to managing scientific nomenclature, PLoS One 2013;8:e56961.
- Good BM, Clarke EL, de Alfaro L et al. The Gene Wiki in 2011: community intelligence applied to human gene annotation, Nucleic Acids Res 2012;40:D1255-1261.
- Renfro DP, McIntosh BK, Venkatraman A et al. GONUTS: the Gene Ontology Normal Usage Tracking System, Nucleic Acids Res 2012;40:D1262-1269.
- Bolser DM, Chibon PY, Palopoli N et al. MetaBase--the wiki-database of biological databases, Nucleic Acids Res 2012;40:D1250-1254.
- Stehr H, Duarte JM, Lappe M et al. PDBWiki: added value through community annotation of the Protein Data Bank, Database (Oxford) 2010;2010:baq009.
- Hodis E, Prilusky J, Martz E et al. Proteopedia - a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules, Genome Biol 2008;9:R121.
- Gardner PP, Daub J, Tate J et al. Rfam: Wikipedia, clans and the "decimal" release, Nucleic Acids Res 2011;39:D141-145.
- Li JW, Robison K, Martin M et al. The SEQanswers wiki: a wiki database of tools for high-throughput sequencing analysis, Nucleic Acids Res 2012;40:D1313-1317.
- Cariaso M, Lennon G. SNPedia: a wiki supporting personal genome annotation, interpretation and analysis, Nucleic Acids Res 2012;40:D1308-1312.
- Mader U, Schmeisky AG, Florez LA et al. SubtiWiki--a comprehensive community resource for the model organism Bacillus subtilis, Nucleic Acids Res 2012;40:D1278-1287.
- Csosz E, Mesko B, Fesus L. Transdab wiki: the interactive transglutaminase substrate database on web 2.0 surface, Amino Acids 2009;36:615-617.
- Zhao D, Wu J, Zhou Y et al. WikiCell: a unified resource platform for human transcriptomics research, OMICS 2012;16:357-362.
- Hoffmann R. A wiki for the life sciences where authorship matters, Nat Genet 2008;40:1047-1051.
- Kelder T, van Iersel MP, Hanspers K et al. WikiPathways: building research communities on biological pathways, Nucleic Acids Res 2012;40:D1301-1307.
- Mons B, Ashburner M, Chichester C et al. Calling on a million minds for community annotation in WikiProteins, Genome Biol 2008;9:R89.
