Biological Wikis

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Name Description Availability MediaWiki-based Reference Powered By AuthorReward
959 Nematode Genomes A semantic wiki for coordinating sequencing projects http://www.nematodegenomes.org Yes [1] No
ArrayWiki A community-maintained system for sharing public microarray data repositories and meta-analyses http://arraywiki.bme.gatech.edu Yes [2] No
BOWiki An ontology-based wiki for annotation of data and integration of knowledge http://www.bowiki.net No [3] No
EcoliWiki A wiki-based community resource for Escherichia coli http://ecoliwiki.net Yes [4] No
ESND A wiki-based English-to-Chinese scientific nomenclature dictionary http://esnd.big.ac.cn Yes [5] No
Gene Wiki A wiki harnessing community intelligence to the annotation of human gene and protein function http://en.wikipedia.org/wiki/Portal:Gene_Wiki Yes [6] No
GONUTS A community-based browser and usage guide for Gene Ontology (GO) terms and a community system for general GO annotation of proteins http://gowiki.tamu.edu Yes [7] No
MetaBase A community-curated database of commonly used biological databases http://www.metadatabase.org Yes [8] No
PDBWiki A community annotated knowledge base of biological molecular structures http://www.pdbwiki.org Yes [9] No
Proteopedia A scientific wiki bridging the rift between three-dimensional structure and function of biomacromolecules http://www.proteopedia.org Yes [10] No
Rfam A community-derived annotation of RNA families http://rfam.sanger.ac.uk Yes [11] No
RiceWiki A wiki-based, publicly editable and open-content platform for community annotation of rice genes http://ricewiki.big.ac.cn Yes Submitted Yes
SEQanswers Wiki A wiki database of tools for high-throughput sequencing analysis http://wiki.SEQanswers.com Yes [12] No
SNPedia A wiki supporting personal genome annotation, interpretation and analysis http://www.snpedia.com Yes [13] No
SubtiWiki A comprehensive community resource for the model organism Bacillus subtilis http://subtiwiki.uni-goettingen.de/wiki/index.php/Main_Page Yes [14] No
Transdab Wiki A wiki database of transglutaminase substrate proteins http://genomics.dote.hu/wiki Yes [15] No
WikiCell A unified resource platform for human transcriptomics research http://www.wikicell.org Yes [16] No
WikiGenes A collaborative knowledge resource for the life sciences http://www.wikigenes.org No [17] No
WikiPathways An open, public platform dedicated to the curation of biological pathways http://www.wikipathways.org Yes [18] No
WikiProteins A wiki-based system for community annotation of proteins http://www.wikiprofessional.org (Not available) [19] No


References:

  1. Kumar S, Schiffer PH, Blaxter M. 959 Nematode Genomes: a semantic wiki for coordinating sequencing projects, Nucleic Acids Res 2012;40:D1295-1300.
  2. Stokes TH, Torrance JT, Li H et al. ArrayWiki: an enabling technology for sharing public microarray data repositories and meta-analyses, BMC Bioinformatics 2008;9 Suppl 6:S18.
  3. Hoehndorf R, Bacher J, Backhaus M et al. BOWiki: an ontology-based wiki for annotation of data and integration of knowledge in biology, BMC Bioinformatics 2009;10 Suppl 5:S5.
  4. McIntosh BK, Renfro DP, Knapp GS et al. EcoliWiki: a wiki-based community resource for Escherichia coli, Nucleic Acids Res 2012;40:D1270-1277.
  5. Dai L, Xu C, Tian M et al. Community intelligence in knowledge curation: an application to managing scientific nomenclature, PLoS One 2013;8:e56961.
  6. Good BM, Clarke EL, de Alfaro L et al. The Gene Wiki in 2011: community intelligence applied to human gene annotation, Nucleic Acids Res 2012;40:D1255-1261.
  7. Renfro DP, McIntosh BK, Venkatraman A et al. GONUTS: the Gene Ontology Normal Usage Tracking System, Nucleic Acids Res 2012;40:D1262-1269.
  8. Bolser DM, Chibon PY, Palopoli N et al. MetaBase--the wiki-database of biological databases, Nucleic Acids Res 2012;40:D1250-1254.
  9. Stehr H, Duarte JM, Lappe M et al. PDBWiki: added value through community annotation of the Protein Data Bank, Database (Oxford) 2010;2010:baq009.
  10. Hodis E, Prilusky J, Martz E et al. Proteopedia - a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules, Genome Biol 2008;9:R121.
  11. Gardner PP, Daub J, Tate J et al. Rfam: Wikipedia, clans and the "decimal" release, Nucleic Acids Res 2011;39:D141-145.
  12. Li JW, Robison K, Martin M et al. The SEQanswers wiki: a wiki database of tools for high-throughput sequencing analysis, Nucleic Acids Res 2012;40:D1313-1317.
  13. Cariaso M, Lennon G. SNPedia: a wiki supporting personal genome annotation, interpretation and analysis, Nucleic Acids Res 2012;40:D1308-1312.
  14. Mader U, Schmeisky AG, Florez LA et al. SubtiWiki--a comprehensive community resource for the model organism Bacillus subtilis, Nucleic Acids Res 2012;40:D1278-1287.
  15. Csosz E, Mesko B, Fesus L. Transdab wiki: the interactive transglutaminase substrate database on web 2.0 surface, Amino Acids 2009;36:615-617.
  16. Zhao D, Wu J, Zhou Y et al. WikiCell: a unified resource platform for human transcriptomics research, OMICS 2012;16:357-362.
  17. Hoffmann R. A wiki for the life sciences where authorship matters, Nat Genet 2008;40:1047-1051.
  18. Kelder T, van Iersel MP, Hanspers K et al. WikiPathways: building research communities on biological pathways, Nucleic Acids Res 2012;40:D1301-1307.
  19. Mons B, Ashburner M, Chichester C et al. Calling on a million minds for community annotation in WikiProteins, Genome Biol 2008;9:R89.
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