Lina Ma

Team Leader, Senior Bioinformatics & Biocuration Scientist

Non-coding RNA Resources

Email: malina (AT)
Tel: +86 (10) 8409-7845







PUBLICATIONS (Google Scholar citations: 1063, as of 201905 )

  1. Ma LN*,#, Cao J#, Liu L#, Li Z, Shireen H, Pervaiz N, Batool F, Raza R, Zou D, Bao YM, Abbasi AA, Zhang Z*: Community curation and expert curation of human long non-coding RNAs. Current Protocols in Bioinformatics 2019.

  2. Wang, G., H. Yin, B. Li, C. Yu, F. Wang, X. Xu, J. Cao, Y. Bao, L. Wang, A. A. Abbasi, V. B. Bajic, L. Ma* and Z. Zhang*:Characterization and identification of long non-coding RNAs based on feature relationship.Bioinformatics 2019, doi: 10.1093/bioinformatics/btz008 (co-corresponding author). [PMID=30649200]

  3. Sang J, Zou D, Wang ZN, Wang F, Zhang YS, Xia L, Li ZH, Ma LN, Li MW, Xu BX, Liu XN, Wu SY, Liu L, Niu GY, Li M, Luo YF, Hu SN, Hao LL, Zhang Z*: Rice Genome Reannotation Using Massive RNA-Seq Data in IC4RGenomics Proteomics & Bioinformatics 2019, in press.

  4. Ma L authored in The RNAcentral ConsortiumRNAcentral: A hub of information for non-coding RNA sequencesNucleic Acids Res 2019. [PMID=30395267]

  5. Ma L as co-first author in BIG Data Center Members: Database Resources of the BIG Data Center in 2019Nucleic Acids Res 2019. [PMID=30365034]

  6. Ma L*,#, Cao J#, Liu L#, Du Q, Li Z, Zou D, Bajic VB, Zhang Z*: LncBook: a curated knowledgebase of human long non-coding RNAs. Nucleic Acids Res 2019. [PMID=30329098]

  7. Ma L as  co-first author in BIG Data Center Members: Database Resources of the BIG Data Center in 2018. Nucleic Acids Res 2018, 46(D1):D14-D20. [PMID=29036542].

  8. Salhi A, Essack M, Alam T,Bajic VPMa LRadovanovic AMarchand B, Schmeier S, Zhang Z, Bajic V: DES-ncRNA: A knowledgebase for exploring information about human micro and long noncoding RNAs based on literature-mining. RNA Biology 2017, 14(7):963-971.[PMID=28387604]

  9. Ma L as  co-first author in BIG Data Center MembersThe BIG Data Center: from deposition to integration to translationNucleic Acids Res 2017, 45(D1):D18-D24. [PMID=27899658]

  10. Ma L authored in The RNAcentral ConsortiumRNAcentral: a comprehensive database of non-coding RNA sequencesNucleic Acids Res 2017, 45(D1):D128-D134. [PMID=27794554]

  11. Yin HY, Wang GY, Ma LN, Yi SV, Zhang Z: What signatures dominantly associate with gene age? Genome Biology and Evolution 2016, 8(10):3083-9. [PMID=27609935]

  12. Yin HY, Ma LN, Wang GY, Li MW, Zhang Z: Old genes experience stronger translational selection than young genesGene 2016, 590(1):29-34.[PMID=27259662]

  13. Ma L authored in IC4R Project ConsortiumInformation Commons for Rice (IC4R)Nucleic Acids Res 2016, 44(D1):D1172-1180. [PMID=26519466]

  14. Ge X and Ma L. “Nutritionomics”-Chapter3 Transcriptome(ISBN 978-7-5679-0383-8). Peking Medical Union College Press, 2015.(Book)

  15. Ma L#, Li A#, Zou D, Xu X, Xia L, Yu J, Bajic VB, Zhang Z: LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAsNucleic Acids Res 2015, 43(Database issue):D187-192. [PMID=25399417]

  16. Zou D#, Ma L#, Yu J, Zhang Z: Biological databases for human researchGenomics Proteomics Bioinformatics 2015, 13(1):55-63. [PMID=25712261]

  17. Zhang Z, Sang J, Ma L, Wu G, Wu H, Huang D, Zou D, Liu S, Li A, Hao L, Tian M, Xu C, Wang X, Wu J, Xiao J, Dai L, Chen LL, Hu S, Yu J: RiceWiki: a wiki-based database for community curation of rice genesNucleic Acids Res 2014, 42(Database issue):D1222-1228. [PMID=24136999]

  18. Ma L, Cui P, Zhu J, Zhang Z, Zhang Z: Translational selection in human: more pronounced in housekeeping genesBiol Direct 2014, 9:17. [PMID=25011537]

  19. Ma L, Bajic VB, Zhang Z: On the classification of long non-coding RNAsRNA Biol 2013, 10(6):925-933. [PMID=23696037]

  20. Ma L, Nie L, Liu J, Zhang B, Song S, Sun M, Yang J, Yang Y, Fang X, Hu S, Zhao Y, Yu J: An RNA-seq-based gene expression profiling of radiation-induced tumorigenic mammary epithelial cellsGenomics Proteomics Bioinformatics 2013, 10(6):326-335. [PMID=23317700]

  21. Ma L, Huang Y, Zhu W, Zhou S, Zhou J, Zeng F, Liu X, Zhang Y, Yu J: An integrated analysis of miRNA and mRNA expressions in non-small cell lung cancersPLoS One 2011, 6(10):e26502. [PMID=22046296]

  22. Ma L, Meng Q, Cheng W, Sung Y, Tang P, Hu S, Yu J: Involvement of the GP63 protease in infection of Trichomonas vaginalisParasitol Res 2011, 109(1):71-79.[PMID=21221643]

  23. Ma L, Chen K, Meng Q, Liu Q, Tang P, Hu S, Yu J: An evolutionary analysis of trypanosomatid GP63 proteasesParasitol Res 2011, 109(4):1075-1084. [PMID=21503641]

  24. Meng Q, Chen K, Ma L, Hu S, Yu J: A systematic identification of Kolobok superfamily transposons in Trichomonas vaginalis and sequence analysis on related transposasesJ Genet Genomics 2011, 38(2):63-70. [PMID=21356525]

  25. Liu XG, Zhu WY, Huang YY, Ma LN, Zhou SQ, Wang YK, Zeng F, Zhou JH, Zhang YK: High expression of serum miR-21 and tumor miR-200c associated with poor prognosis in patients with lung cancerMed Oncol 2011, 29(2):618-626. [PMID=21516486]

  26. Zeng F, Li YC, Chen G, Zhang YK, Wang YK, Zhou SQ, Ma LN, Zhou JH, Huang YY, Zhu WY, Liu XG: Nicotine inhibits cisplatin-induced apoptosis in NCI-H446 cellsMed Oncol2011, 29(1):364-373. [PMID=21267677]

  27. Chen K, Meng Q, Ma L, Liu Q, Tang P, Chiu C, Hu S, Yu J: A novel DNA sequence periodicity decodes nucleosome positioningNucleic Acids Res 2008, 36(19):6228-6236.[PMID=18829715]