Silene latifolia - Plant Editosome Database - BIG Data Center

Summary

Species: Silene latifolia
NCBI Taxonomy: 37657
Organelle:Chloroplast (NC_016730.1)
Edited Genes:13
Editing Events:26
Gene Editing Events Genomic Position Region Strand RNA Type Codons Amino Acids
atpA110197CDS-mRNAC-to-UUCC=>UCUS=>S
clpP168834CDS-mRNAC-to-UCAU=>UAUH=>Y
matK12780CDS-mRNAC-to-UCAU=>UAUH=>Y
ndhA3118866
118641
118134
CDS
CDS
CDS
-
-
-
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
UCC=>UUC
S=>L
S=>L
S=>F
ndhB8140436
139791
139785
139701
139692
139541
139422
139104
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+
+
+
+
+
+
+
+
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCA=>CUA
UCA=>UUA
UCA=>UUA
UCU=>UUU
CCA=>CUA
CAU=>UAU
CCA=>CUA
UCA=>UUA
P=>L
S=>L
S=>L
S=>F
P=>L
H=>Y
P=>L
S=>L
ndhD3115335
114954
114450
CDS
CDS
CDS
-
-
-
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
ACG=>AUG
UCA=>UUA
CCU=>CUU
T=>M
S=>L
P=>L
petL164722CDS+mRNAC-to-UCCU=>CUUP=>L
psbF163172CDS-mRNAC-to-UUCU=>UUUS=>F
psbL163100CDS-mRNAC-to-UACG=>AUGT=>M
psbZ134120CDS+mRNAC-to-UUCA=>UUAS=>L
rpoB325336
25258
25243
CDS
CDS
CDS
-
-
-
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
UCG=>UUG
S=>L
S=>L
S=>L
rps2115000CDS-mRNAC-to-UUCA=>UUAS=>L
trnI-CAU184201-84274Exon-tRNAC-to-UCAU=>UAUH=>Y

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)