Apopellia endiviifolia - Plant Editosome Database - BIG Data Center

Summary

Species: Apopellia endiviifolia
NCBI Taxonomy: 304445
Organelle:Chloroplast (NC_019628.1)
Edited Genes:25
Editing Events:55
Gene Editing Events Genomic Position Region Strand RNA Type Codons Amino Acids
atpB155770CDS-mRNAC-to-UUCG=>UCUS=>S
atpF119168CDS+mRNAC-to-UCCA=>CUAP=>L
atpH218762
18726
CDS
CDS
+
+
mRNA
mRNA
C-to-U
C-to-U
CCG=>CUG
UCA=>UUA
P=>L
S=>L
atpI418161
17960
17821
18233
CDS
CDS
CDS
CDS
+
+
+
+
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
CCA=>CUA
CCU=>CUU
CUU=>UUU
CCA=>CUA
P=>L
P=>L
L=>F
P=>L
ccsA396470
96391
95990
CDS
CDS
CDS
+
+
+
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
CCU=>CUU
CGG=>UGG
ACG=>AUG
P=>L
R=>W
T=>M
clpP369044
69283
68400
CDS
CDS
CDS
-
-
-
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
UCA=>UUA
CUC=>CUU
UCU=>UUU
S=>L
L=>L
S=>F
ndhB13848CDS+mRNAC-to-UUCU=>UUUS=>F
ndhD597306
98082
97593
97806
98094
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CAU=>UAU
UCA=>UUA
UCU=>UUU
CCA=>CUA
UCA=>UUA
H=>Y
S=>L
S=>F
P=>L
S=>L
ndhE299405
99164-99466
NA
CDS
+
-
Unanotated Transcript
mRNA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
ndhF591552
91558
93049
92563
93064
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCA=>CUA
UCU=>UUU
UCA=>UUA
UCA=>UUA
UCA=>UUA
P=>L
S=>F
S=>L
S=>L
S=>L
ndhG299562-100137
99694
CDS
NA
-
+
mRNA
Unanotated Transcript
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
ndhK153374CDS-mRNAC-to-UAUG=>UUGM=>L
petA363497
63057
63081
CDS
CDS
CDS
+
+
+
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
CCG=>UCG
CCA=>CUA
UCA=>UUA
P=>S
P=>L
S=>L
petB373693
73780
73354
CDS
CDS
CDS
+
+
+
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCU=>UUU
UCC=>UUC
S=>L
S=>F
S=>F
petG165653CDS+mRNAC-to-UUCG=>UUGS=>L
petL265364
65416
CDS
CDS
+
+
mRNA
mRNA
C-to-U
C-to-U
UCU=>UUU
UCA=>UCU
S=>F
S=>S
petN15695CDS-mRNAC-to-UGAU=>GUUD=>V
psaB344754
44736
43923
CDS
CDS
CDS
-
-
-
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
CCA=>CUA
UCU=>UUU
CCA=>CUA
P=>L
S=>F
P=>L
psbB271009
70717
CDS
CDS
+
+
mRNA
mRNA
C-to-U
C-to-U
UCC=>UUC
CGU=>UGU
S=>F
R=>C
psbC141369CDS+mRNAC-to-UCGU=>UGUR=>C
psbM24425
4431
CDS
CDS
+
+
mRNA
mRNA
C-to-U
C-to-U
UCU=>UUU
UCA=>UUA
S=>F
S=>L
rpl23282244
82119
CDS
CDS
-
-
mRNA
mRNA
C-to-U
C-to-U
ACG=>AUG
CUU=>UUU
T=>M
L=>F
rpoB38217
7691
7140
CDS
CDS
CDS
+
+
+
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
UCA=>UUA
CAU=>UAU
UCA=>UUA
S=>L
H=>Y
S=>L
rpoC2112577CDS+mRNAC-to-UCCU=>CUUP=>L
ycf3149910CDS-mRNAC-to-UCCG=>CUGP=>L

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)