Saccharum hybrid cultivar SP80-3280 - Plant Editosome Database - BIG Data Center

Summary

Species: Saccharum hybrid cultivar SP80-3280
NCBI Taxonomy: 193079
Organelle:Chloroplast (NC_005878.2)
Edited Genes:13
Editing Events:25
Gene Editing Events Genomic Position Region Strand RNA Type Codons Amino Acids
atpA199853CDS+mRNAC-to-UUCA=>UUAS=>L
ndhA436576
36153
36063
35556
CDS
CDS
CDS
CDS
-
-
-
-
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
UCG=>UUG
UCA=>UUA
UCA=>UUA
UCC=>UUC
S=>L
S=>L
S=>L
S=>F
ndhB6NA
NA
NA
NA
NA
NA
CDS
CDS
CDS
CDS
CDS
CDS
NA
NA
NA
NA
NA
NA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCA=>CUA
CAU=>UAU
UCA=>UUA
CCA=>CUA
UCA=>UUA
CCA=>CUA
P=>L
H=>Y
S=>L
P=>L
S=>L
P=>L
ndhD131960CDS-mRNAC-to-UUCA=>UUAS=>L
ndhF128413CDS-mRNAC-to-UUCA=>UUAS=>L
petB1136733CDS+mRNAC-to-UCCA=>CUAP=>L
rpl2160230CDS+mRNAC-to-UACG=>AUGT=>M
rpl201130563CDS-mRNAC-to-UUCA=>UUAS=>L
rpoB484014
84092
84107
84164
CDS
CDS
CDS
CDS
+
+
+
+
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
UCG=>UUG
UCA=>UUA
UCG=>UUG
CCG=>CUG
S=>L
S=>L
S=>L
P=>L
rpoC2191837CDS+mRNAC-to-UUCG=>UUGS=>L
rps141101076CDS-mRNAC-to-UUCA=>UUAS=>L
rps81NACDSNAmRNAC-to-UUCA=>UUAS=>L
ycf32NA
NA
CDS
CDS
NA
NA
mRNA
mRNA
C-to-U
C-to-U
UCC=>UUC
ACG=>AUG
S=>F
T=>M

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)