Ampelopteris prolifera - Plant Editosome Database

Chloroplast

Gene	Editing Events	Genomic Position	Region	Strand	RNA	Type	Codons	Amino Acids
accD	2	55629 54853	CDS CDS	+ +	mRNA mRNA	U-to-C C-to-U	UAA=>CAA ACG=>AUG	TERM=>Q T=>M
atpA	2	10683 10186-11709	NA CDS	+ -	Unanotated Transcript mRNA	U-to-C NA	NA=>NA NA=>NA	NA=>NA NA=>NA
atpB	1	50758-52239	CDS	-	mRNA	NA	NA=>NA	NA=>NA
atpF	3	11790-12199 12896-13040 13039	CDS CDS NA	- - +	mRNA mRNA Unanotated Transcript	NA NA C-to-U	NA=>NA NA=>NA NA=>NA	NA=>NA NA=>NA NA=>NA
atpH	2	13362-13607 13606	CDS NA	- +	mRNA Unanotated Transcript	NA C-to-U	NA=>NA NA=>NA	NA=>NA NA=>NA
atpI	3	15103 15035 14358-15104	NA NA CDS	+ + -	Unanotated Transcript Unanotated Transcript mRNA	C-to-U U-to-C NA	NA=>NA NA=>NA NA=>NA	NA=>NA NA=>NA NA=>NA
ccsA	1	111054	CDS	+	mRNA	C-to-U	ACG=>AUG	T=>M
chlB	2	4863-6407 6158	CDS NA	- +	mRNA Unanotated Transcript	NA U-to-C	NA=>NA NA=>NA	NA=>NA NA=>NA
chlL	4	127343-128245 127522 128244 127345	CDS NA NA NA	- + + +	mRNA Unanotated Transcript Unanotated Transcript Unanotated Transcript	NA U-to-C C-to-U C-to-U	NA=>NA NA=>NA NA=>NA NA=>NA	NA=>NA NA=>NA NA=>NA NA=>NA
chlN	1	125880-127271	CDS	-	mRNA	NA	NA=>NA	NA=>NA
infA	3	76457 76511 76335-76577	NA NA CDS	+ + -	Unanotated Transcript Unanotated Transcript mRNA	U-to-C U-to-C NA	NA=>NA NA=>NA NA=>NA	NA=>NA NA=>NA NA=>NA
matK	3	1473-2981 2714 2720	CDS NA NA	- + +	mRNA Unanotated Transcript Unanotated Transcript	NA U-to-C U-to-C	NA=>NA NA=>NA NA=>NA	NA=>NA NA=>NA NA=>NA
ndhA	2	116436-116993 117952-118509	CDS CDS	- -	mRNA mRNA	NA NA	NA=>NA NA=>NA	NA=>NA NA=>NA
ndhB	2	508-1245 150631-151395	CDS CDS	- -	mRNA mRNA	NA NA	NA=>NA NA=>NA	NA=>NA NA=>NA
ndhC	2	48234-48596 48236	CDS NA	- +	mRNA Unanotated Transcript	NA C-to-U	NA=>NA NA=>NA	NA=>NA NA=>NA
ndhD	1	112407-113915	CDS	-	mRNA	NA	NA=>NA	NA=>NA
ndhE	2	114610-114912 114911	CDS NA	- +	mRNA Unanotated Transcript	NA C-to-U	NA=>NA NA=>NA	NA=>NA NA=>NA
ndhF	3	106294-108528 107892 108168	CDS NA NA	- + +	mRNA Unanotated Transcript Unanotated Transcript	NA U-to-C U-to-C	NA=>NA NA=>NA NA=>NA	NA=>NA NA=>NA NA=>NA
ndhG	2	115008-115601 115600	CDS NA	- +	mRNA Unanotated Transcript	NA C-to-U	NA=>NA NA=>NA	NA=>NA NA=>NA
ndhH	2	118513 118511-119689	NA CDS	+ -	Unanotated Transcript mRNA	C-to-U NA	NA=>NA NA=>NA	NA=>NA NA=>NA
ndhI	1	115767-116291	CDS	-	mRNA	NA	NA=>NA	NA=>NA
ndhK	2	47506-48243 47535	CDS NA	- +	mRNA Unanotated Transcript	NA U-to-C	NA=>NA NA=>NA	NA=>NA NA=>NA
Novel	1	1244	NA	+	Unanotated Transcript	C-to-U	NA=>NA	NA=>NA
petA	2	59423 59414	CDS CDS	+ +	mRNA mRNA	U-to-C U-to-C	UAA=>CAA UAG=>CAG	TERM=>Q TERM=>Q
petB	1	72916	CDS	+	mRNA	C-to-U	CAA=>UAA	Q=>TERM
petD	2	73784-74254 73124-73132	CDS CDS	+ +	mRNA mRNA	NA NA	NA=>NA NA=>NA	NA=>NA NA=>NA
petN	2	29330-29419 29418	CDS NA	- +	mRNA Unanotated Transcript	NA C-to-U	NA=>NA NA=>NA	NA=>NA NA=>NA
psaB	2	39040 36837-39041	NA CDS	+ -	Unanotated Transcript mRNA	C-to-U NA	NA=>NA NA=>NA	NA=>NA NA=>NA
psaC	1	114047-114292	CDS	-	mRNA	NA	NA=>NA	NA=>NA
psbB	2	70407 68884	CDS CDS	+ +	mRNA mRNA	C-to-U C-to-U	CAA=>UAA ACG=>AUG	Q=>TERM T=>M
psbC	1	31795-33216	CDS	-	mRNA	NA	NA=>NA	NA=>NA
psbD	1	33215	NA	+	Unanotated Transcript	C-to-U	NA=>NA	NA=>NA
psbE	2	61331-61582 61531	CDS NA	- +	mRNA Unanotated Transcript	NA U-to-C	NA=>NA NA=>NA	NA=>NA NA=>NA
psbF	1	61202-61321	CDS	-	mRNA	NA	NA=>NA	NA=>NA
psbH	1	71126	CDS	+	mRNA	C-to-U	ACG=>AUG	T=>M
psbL	2	61064-61180 61179	CDS NA	- +	mRNA Unanotated Transcript	NA C-to-U	NA=>NA NA=>NA	NA=>NA NA=>NA
psbM	1	28326	CDS	+	mRNA	C-to-U	ACG=>AUG	T=>M
rpl14	3	77681 77316 77314-77682	NA NA CDS	+ + -	Unanotated Transcript Unanotated Transcript mRNA	C-to-U C-to-U NA	NA=>NA NA=>NA NA=>NA	NA=>NA NA=>NA NA=>NA
rpl16	3	78965 78958-78966 77801-78205	NA CDS CDS	+ - -	Unanotated Transcript mRNA mRNA	C-to-U NA NA	NA=>NA NA=>NA NA=>NA	NA=>NA NA=>NA NA=>NA
rpl2	4	80526-80962 81692-82088 80903 82079	CDS CDS NA NA	- - + +	mRNA mRNA Unanotated Transcript Unanotated Transcript	NA NA U-to-C U-to-C	NA=>NA NA=>NA NA=>NA NA=>NA	NA=>NA NA=>NA NA=>NA NA=>NA
rpl21	1	109109	CDS	+	mRNA	U-to-C	UAA=>CAA	TERM=>Q
rpl22	3	79827-80195 80194 79949	CDS NA NA	- + +	mRNA Unanotated Transcript Unanotated Transcript	NA C-to-U U-to-C	NA=>NA NA=>NA NA=>NA	NA=>NA NA=>NA NA=>NA
rpl23	1	82160-82429	CDS	-	mRNA	NA	NA=>NA	NA=>NA
rpl36	2	76208 76087-76209	NA CDS	+ -	Unanotated Transcript mRNA	C-to-U NA	NA=>NA NA=>NA	NA=>NA NA=>NA
rpoA	2	75352 74570-75592	NA CDS	+ -	Unanotated Transcript mRNA	U-to-C NA	NA=>NA NA=>NA	NA=>NA NA=>NA
rpoB	7	23453-26668 26542 26440 25951 24088 24937 24985	CDS NA NA NA NA NA NA	- + + + + + +	mRNA Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript	NA U-to-C U-to-C U-to-C U-to-C U-to-C U-to-C	NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA	NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA
rpoC1	4	21427 23288 22971-23402 20585-22255	NA NA CDS CDS	+ + - -	Unanotated Transcript Unanotated Transcript mRNA mRNA	U-to-C U-to-C NA NA	NA=>NA NA=>NA NA=>NA NA=>NA	NA=>NA NA=>NA NA=>NA NA=>NA
rpoC2	2	20195 16164-20426	NA CDS	+ -	Unanotated Transcript mRNA	U-to-C NA	NA=>NA NA=>NA	NA=>NA NA=>NA
rps11	2	75629-76021 75901	CDS NA	- +	mRNA Unanotated Transcript	NA U-to-C	NA=>NA NA=>NA	NA=>NA NA=>NA
rps16	3	4664-4705 3637-3867 3657	CDS CDS NA	- - +	mRNA mRNA Unanotated Transcript	NA NA U-to-C	NA=>NA NA=>NA NA=>NA	NA=>NA NA=>NA NA=>NA
rps18	1	64327	CDS	+	mRNA	C-to-U	ACG=>AUG	T=>M
rps19	2	80490 80213-80491	NA CDS	+ -	Unanotated Transcript mRNA	C-to-U NA	NA=>NA NA=>NA	NA=>NA NA=>NA
rps2	5	15304 15616 15493 15580 15293-16009	NA NA NA NA CDS	+ + + + -	Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript mRNA	U-to-C U-to-C U-to-C U-to-C NA	NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA	NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA
rps3	3	79078-79734 79733 79689	CDS NA NA	- + +	mRNA Unanotated Transcript Unanotated Transcript	NA C-to-U U-to-C	NA=>NA NA=>NA NA=>NA	NA=>NA NA=>NA NA=>NA
rps4	3	44352-44972 44971 44771	CDS NA NA	- + +	mRNA Unanotated Transcript Unanotated Transcript	NA C-to-U U-to-C	NA=>NA NA=>NA NA=>NA	NA=>NA NA=>NA NA=>NA
rps7	2	138322 96203	NA CDS	+ +	Unanotated Transcript mRNA	U-to-C U-to-C	NA=>NA UAA=>CAA	NA=>NA TERM=>Q
ycf1	3	120361-125448 125447 124485	CDS NA NA	- + +	mRNA Unanotated Transcript Unanotated Transcript	NA C-to-U U-to-C	NA=>NA NA=>NA NA=>NA	NA=>NA NA=>NA NA=>NA
ycf2	12	134102 131150 135461 129461 134315 132047 100423 102478 99066 105064 100210 103375	NA NA NA NA NA NA CDS CDS CDS CDS CDS CDS	+ + + + + + + + + + + +	Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript Unanotated Transcript mRNA mRNA mRNA mRNA mRNA mRNA	U-to-C U-to-C U-to-C U-to-C U-to-C U-to-C U-to-C U-to-C U-to-C U-to-C U-to-C U-to-C	NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA UAA=>CAA UAA=>CAA UGA=>UGC UAA=>CAA UAA=>CAA UAA=>CAA	NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA TERM=>Q TERM=>Q TERM=>C TERM=>Q TERM=>Q TERM=>Q
ycf3	5	43423-43547 42457-42685 41658-41819 42645 43546	CDS CDS CDS NA NA	- - - + +	mRNA mRNA mRNA Unanotated Transcript Unanotated Transcript	NA NA NA U-to-C C-to-U	NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA	NA=>NA NA=>NA NA=>NA NA=>NA NA=>NA

( NA = Data Not Available )

Species:	Ampelopteris prolifera
NCBI Taxonomy:	1132527
Organelle:	Chloroplast (NC_035835.1)
Edited Genes:	59 matK ndhH chlL rpl2 ycf3 ndhC ndhD ndhB rpl22 psbM Novel rpoC2 rpoA rps16 atpB psbL psbF ndhI psbE psaB ndhA rps18 rpl14 rps3 ycf2 ccsA psbD rps11 atpF rpoC1 rps19 rps2 atpI ndhK atpH rpl36 rpoB atpA psaC ndhE petB rpl16 petN rps4 chlB infA petD chlN ndhF ndhG psbH petA rpl23 rpl21 psbC rps7 accD ycf1 psbB
Editing Events:	141

Plant Editosome Database
a curated database of RNA editosome in plants

Summary

Chloroplast