ycf4 - Plant Editosome Database - BIG Data Center

Summary

Gene: ycf4
Function: Photosystem I assembly protein
Species: 21
Editing Types:
C-to-U (23)
U-to-C (4)
Editing Events: 35 (C-to-U: 23   NA: 8   U-to-C: 4)
External Link: NCBI Gene
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid
Anthoceros angustusChloroplast9
C-to-U: 5
U-to-C: 4
76941
76990
76999
77000
77001
77058
77076
77221
77251
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+U-to-C
C-to-U
C-to-U
U-to-C
U-to-C
C-to-U
C-to-U
U-to-C
C-to-U
CUC=>CCC
UCC=>UUC
CCA=>CUA
UGA=>CGA
UAA=>CAA
CCC=>CCU
CCC=>CUC
UAA=>CAA
CCU=>UCU
L=>P
S=>F
P=>L
TERM=>R
TERM=>Q
P=>P
P=>L
TERM=>Q
P=>S
Asplenium prolongatumChloroplast1
C-to-U: 1
56293CDS+C-to-UCAG=>UAGQ=>TERM
Athyrium opacumChloroplast1
C-to-U: 1
56648CDS+C-to-UCAA=>UAAQ=>TERM
Austroblechnum melanocaulonChloroplast1
C-to-U: 1
56795CDS+C-to-UCAA=>UAAQ=>TERM
Cocos nuciferaChloroplast2
C-to-U: 2
59915CDS
CDS
+C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
S=>L
S=>L
Cystopteris chinensisChloroplast1
C-to-U: 1
56811CDS+C-to-UCAA=>UAAQ=>TERM
Diplaziopsis cavalerianaChloroplast1
C-to-U: 1
57227CDS+C-to-UCAA=>UAAQ=>TERM
Elaeis guineensisChloroplast1
C-to-U: 1
61530CDSNAC-to-UUCA=>UUAS=>L
Homalosorus pycnocarposChloroplast1
C-to-U: 1
57462CDS+C-to-UCAA=>UAAQ=>TERM
Hymenasplenium unilateraleChloroplast1
C-to-U: 1
57570CDS+C-to-UCGA=>UGAR=>TERM
Isoetes flaccidaChloroplast1
NA: 1
27998-28594CDS-NANA=>NANA=>NA
Jenufa minutaChloroplast1
NA: 1
76270-76917CDS-NANA=>NANA=>NA
Lepisorus clathratusChloroplast1
C-to-U: 1
55366CDS+C-to-UACG=>AUGT=>M
Lygodium japonicumChloroplast1
NA: 1
58162-58725CDS+NANA=>NANA=>NA
Macrothelypteris torresianaChloroplast1
C-to-U: 1
56765CDS+C-to-UCAA=>UAAQ=>TERM
Nothoceros aenigmaticusPlastid2
NA: 2
78800-79354NA
NA
+NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Pseudophegopteris auritaChloroplast1
C-to-U: 1
56367CDS+C-to-UCAA=>UAAQ=>TERM
Schizaea elegansChloroplast1
C-to-U: 1
49296CDS+C-to-UACG=>AUGT=>M
Schizaea pectinataChloroplast1
C-to-U: 1
47171CDS+C-to-UACG=>AUGT=>M
Takakia lepidozioidesChloroplast1
NA: 1
77579-78133NA+NANA=>NANA=>NA
Woodwardia unigemmataChloroplast1
C-to-U: 1
56683CDS+C-to-UCAA=>UAAQ=>TERM
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)