ycf3 - Plant Editosome Database - BIG Data Center

Summary

Gene: ycf3
Function: Photosystem I assembly protein
Species: 54
Editing Factors:4 (DYW2, NUWA, ORRM1, OsSLC1)
Editing Types:
C-to-U (69)
U-to-C (40)
Editing Events: 255 (NA: 146   C-to-U: 69   U-to-C: 40)
External Link: NCBI Gene
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid
Adiantum capillus-venerisChloroplast3
NA: 3
40703-40900
41524-41752
42484-42608
CDS
CDS
CDS
-NA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Alsophila spinulosaChloroplast3
NA: 3
43814-43978
44631-44860
45574-45697
CDS
CDS
CDS
-NA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Ampelopteris proliferaChloroplast5
C-to-U: 1
NA: 3
U-to-C: 1
41658-41819
42457-42685
42645
43423-43547
43546
CDS
CDS
NA
CDS
NA
-
+
NA
NA
C-to-U
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Anthoceros angustusChloroplast19
C-to-U: 10
NA: 3
U-to-C: 6
59681-59839
59742
59757
59782
60593-60822
60603
60621
60630
60633
60664
60672
60721
60736
60783
61505-61628
61522
61541
61564
61600
NA
NA
CDS
NA
NA
NA
NA
NA
CDS
NA
NA
NA
NA
NA
NA
CDS
NA
NA
NA
+
-
U-to-C
U-to-C
NA
C-to-U
U-to-C
C-to-U
C-to-U
C-to-U
NA
C-to-U
U-to-C
C-to-U
C-to-U
U-to-C
C-to-U
NA
U-to-C
C-to-U
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Apopellia endiviifoliaChloroplast1
C-to-U: 1
49910CDS-C-to-UCCG=>CUGP=>L
Asplenium pekinenseChloroplast5
C-to-U: 1
NA: 3
U-to-C: 1
41379-41540
42158-42386
42346
43115-43239
43238
NA
CDS
CDS
NA
CDS
+
-
U-to-C
NA
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Asplenium prolongatumChloroplast5
C-to-U: 1
NA: 3
U-to-C: 1
41053-41214
41834-42062
42022
42796-42920
42919
NA
CDS
NA
CDS
CDS
+
-
C-to-U
NA
U-to-C
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium anisopterumChloroplast5
C-to-U: 1
NA: 3
U-to-C: 1
41466-41627
42257-42485
42445
43223-43347
43346
NA
CDS
NA
CDS
CDS
+
-
C-to-U
NA
U-to-C
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium opacumChloroplast5
C-to-U: 1
NA: 3
U-to-C: 1
41314-41475
42102-42330
42290
43060-43184
43183
CDS
NA
CDS
NA
CDS
-
+
NA
U-to-C
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium sheareriChloroplast5
C-to-U: 1
NA: 3
U-to-C: 1
41469-41630
42256-42484
42444
43212-43336
43335
CDS
CDS
NA
CDS
NA
-
+
NA
NA
C-to-U
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium sinenseChloroplast5
C-to-U: 1
NA: 3
U-to-C: 1
41452-41613
42239-42467
42427
43197-43321
43320
CDS
NA
CDS
CDS
NA
-
+
NA
U-to-C
NA
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Austroblechnum melanocaulonChloroplast4
NA: 3
U-to-C: 1
41580-41741
42366-42594
42554
43326-43450
CDS
CDS
CDS
NA
-
+
NA
NA
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Christella appendiculataChloroplast5
C-to-U: 1
NA: 3
U-to-C: 1
41478-41639
42282-42510
42470
43248-43372
43371
CDS
NA
CDS
NA
CDS
-
+
NA
U-to-C
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Cocos nuciferaChloroplast8
C-to-U: 8
41190
41406
41412
41553
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
ACG=>AUG
CCA=>CUA
UCC=>UUC
UCU=>UUU
ACG=>AUG
CCA=>CUA
UCC=>UUC
UCU=>UUU
T=>M
P=>L
S=>F
S=>F
T=>M
P=>L
S=>F
S=>F
Cypripedium macranthosChloroplast4
C-to-U: 4
42572
42788
42794
42935
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
ACG=>AUG
UCC=>UUC
UCU=>UUU
CCA=>CUA
T=>M
S=>F
S=>F
P=>L
Cyrtomium devexiscapulaeChloroplast5
C-to-U: 1
NA: 3
U-to-C: 1
41456-41617
42243-42471
42431
43197-43321
43320
NA
CDS
NA
CDS
CDS
+
-
U-to-C
NA
C-to-U
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Cyrtomium falcatumChloroplast5
C-to-U: 1
NA: 3
U-to-C: 1
41596-41757
42383-42611
42571
43337-43461
43460
CDS
NA
CDS
NA
CDS
-
+
NA
C-to-U
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Cystopteris chinensisChloroplast5
C-to-U: 1
NA: 3
U-to-C: 1
41402-41563
42192-42420
42380
43151-43275
43274
NA
CDS
CDS
NA
CDS
+
-
U-to-C
NA
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Dendrobium officinaleChloroplast3
C-to-U: 3
43087
43093
43234
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
UCU=>UUU
CCA=>CUA
ACG=>AUG
S=>F
P=>L
T=>M
Deparia lanceaChloroplast4
NA: 3
U-to-C: 1
41156-41317
41943-42171
42131
42907-43031
CDS
NA
CDS
CDS
-
+
NA
U-to-C
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deparia pycnosoraChloroplast4
NA: 3
U-to-C: 1
41483-41644
42270-42498
42458
43229-43353
CDS
CDS
NA
CDS
-
+
NA
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deparia viridifronsChloroplast4
NA: 3
U-to-C: 1
41447-41608
42224-42452
42412
43189-43313
CDS
CDS
CDS
NA
-
+
NA
NA
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deschampsia antarcticaPlastid1
C-to-U: 1
41669CDS-C-to-UUCC=>UUCS=>F
Diplaziopsis cavalerianaChloroplast5
C-to-U: 1
NA: 3
U-to-C: 1
41913-42074
42702-42930
42890
43680-43804
43803
CDS
CDS
NA
CDS
NA
-
+
NA
NA
C-to-U
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplaziopsis javanicaChloroplast5
C-to-U: 1
NA: 3
U-to-C: 1
42027-42188
42809-43037
42997
43792-43916
43915
NA
CDS
CDS
NA
CDS
+
-
C-to-U
NA
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium bellumChloroplast5
C-to-U: 1
NA: 3
U-to-C: 1
41506-41667
42282-42510
42470
43241-43365
43364
NA
CDS
NA
CDS
CDS
+
-
U-to-C
NA
C-to-U
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium dilatatumChloroplast4
NA: 3
U-to-C: 1
41256-41417
42043-42271
42231
43002-43126
CDS
CDS
NA
CDS
-
+
NA
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium dushanenseChloroplast5
C-to-U: 1
NA: 3
U-to-C: 1
41411-41572
42198-42426
42386
43156-43280
43279
CDS
NA
CDS
NA
CDS
-
+
NA
C-to-U
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium striatumChloroplast5
C-to-U: 1
NA: 3
U-to-C: 1
41073-41234
41860-42088
42048
42818-42942
42941
NA
CDS
CDS
NA
CDS
+
-
C-to-U
NA
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium unilobumChloroplast5
C-to-U: 1
NA: 3
U-to-C: 1
41436-41597
42223-42451
42411
43182-43306
43305
NA
CDS
CDS
NA
CDS
+
-
U-to-C
NA
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplopterygium glaucumChloroplast3
NA: 3
57265-57420
58058-58285
58992-59117
NA
NA
NA
-NA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Dryopteris decipiensChloroplast5
C-to-U: 1
NA: 3
U-to-C: 1
41498-41659
42285-42513
42473
43254-43378
43377
CDS
NA
CDS
NA
CDS
-
+
NA
U-to-C
NA
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Homalosorus pycnocarposChloroplast5
C-to-U: 1
NA: 3
U-to-C: 1
42010-42171
42797-43025
42985
43775-43899
43898
CDS
NA
CDS
NA
CDS
-
+
NA
C-to-U
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Hymenasplenium unilateraleChloroplast4
NA: 3
U-to-C: 1
41268-41429
42050-42278
42238
43015-43139
CDS
NA
CDS
CDS
-
+
NA
U-to-C
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Hypodematium crenatumChloroplast4
C-to-U: 1
NA: 3
41361-41522
42153-42381
43120-43244
43243
CDS
CDS
CDS
NA
-
+
NA
NA
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Jenufa minutaChloroplast1
NA: 1
75362-75865CDS-NANA=>NANA=>NA
Lepisorus clathratusChloroplast4
NA: 3
U-to-C: 1
40482-40643
41290-41518
41478
42263-42387
CDS
NA
CDS
CDS
-
+
NA
U-to-C
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Lygodium japonicumChloroplast3
NA: 3
43018-43182
43844-44071
44775-44900
CDS
CDS
CDS
-NA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Macrothelypteris torresianaChloroplast5
C-to-U: 1
NA: 3
U-to-C: 1
41464-41625
42255-42483
42443
43230-43354
43353
CDS
CDS
NA
CDS
NA
-
+
NA
NA
C-to-U
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Marsilea crenataChloroplast3
NA: 3
45448-45606
46283-46510
47229-47354
CDS
CDS
CDS
-NA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Matteuccia struthiopterisChloroplast4
NA: 3
U-to-C: 1
41745-41906
42537-42765
42725
43511-43635
CDS
CDS
CDS
NA
-
+
NA
NA
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Myriopteris lindheimeriChloroplast4
C-to-U: 1
NA: 3
41251-41448
42067-42295
43034-43158
43157
CDS
NA
CDS
CDS
-
+
NA
C-to-U
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Nothoceros aenigmaticusPlastid8
NA: 8
61209-61381
61209-63194
62138-62367
63071-63194
Exon
Exon
NA
Exon
Exon
Exon
NA
Exon
-NA
NA
NA
NA
NA
NA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Onoclea sensibilisChloroplast4
NA: 3
U-to-C: 1
41469-41630
42256-42484
42444
43226-43350
NA
CDS
CDS
CDS
+
-
U-to-C
NA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Panicum virgatumChloroplast1
C-to-U: 1
44666CDSNAC-to-UNA=>NAT=>M
Pelargonium alternansChloroplast1
C-to-U: 1
44689CDS+C-to-UCCA=>UCAP=>S
Phalaenopsis equestrisChloroplast3
C-to-U: 3
44268
44274
44415
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
UCU=>UUU
CCA=>CUA
ACG=>AUG
S=>F
P=>L
T=>M
Pseudophegopteris auritaChloroplast4
C-to-U: 1
NA: 3
41088-41249
41877-42105
42846-42970
42969
CDS
NA
CDS
CDS
-
+
NA
C-to-U
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Pteridium aquilinum subsp. aquilinumChloroplast4
NA: 3
U-to-C: 1
41350-41559
42172-42400
42360
43141-43265
CDS
NA
CDS
CDS
-
+
NA
U-to-C
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Rhachidosorus consimilisChloroplast5
C-to-U: 1
NA: 3
U-to-C: 1
42048-42209
42835-43063
43023
43810-43934
43933
CDS
NA
CDS
NA
CDS
-
+
NA
C-to-U
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Saccharum hybrid cultivar SP80-3280Chloroplast2
C-to-U: 2
NACDS
CDS
NAC-to-U
C-to-U
UCC=>UUC
ACG=>AUG
S=>F
T=>M
Stegnogramma sagittifoliaChloroplast5
C-to-U: 1
NA: 3
U-to-C: 1
41479-41640
42272-42500
42460
43242-43366
43365
CDS
NA
CDS
NA
CDS
-
+
NA
C-to-U
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Woodsia macrochlaenaChloroplast5
C-to-U: 1
NA: 3
U-to-C: 1
41308-41469
42097-42325
42285
43069-43193
43192
CDS
NA
CDS
NA
CDS
-
+
NA
C-to-U
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Woodsia polystichoidesChloroplast5
C-to-U: 1
NA: 3
U-to-C: 1
41141-41302
41937-42165
42125
42909-43033
43032
NA
CDS
NA
CDS
CDS
+
-
C-to-U
NA
U-to-C
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)