| Gene: | ycf1 |
| Function: | Photosystem I assembly protein |
| Species: | 54 |
| Editing Types: |
|
| Editing Events: | 137 (NA: 56 U-to-C: 45 C-to-U: 36) |
| External Link: | NCBI Gene |
| Species | Organelle | Editing Events | Editing Types | Genomic Position | Region | Strand | Type | Codons | Amino Acid |
|---|---|---|---|---|---|---|---|---|---|
| Adiantum capillus-veneris | Chloroplast | 1 | NA: 1 | 119372-124462 | CDS | - | NA | NA=>NA | NA=>NA |
| Alsophila spinulosa | Chloroplast | 1 | NA: 1 | 124493-129589 | CDS | - | NA | NA=>NA | NA=>NA |
| Ampelopteris prolifera | Chloroplast | 3 | C-to-U: 1 NA: 1 U-to-C: 1 | 120361-125448 124485 125447 | NA CDS NA | + - | C-to-U NA U-to-C | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| Asplenium pekinense | Chloroplast | 2 | NA: 1 U-to-C: 1 | 119913-125009 124094 | NA CDS | + - | U-to-C NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| Asplenium prolongatum | Chloroplast | 2 | NA: 1 U-to-C: 1 | 119317-124458 123507 | NA CDS | + - | U-to-C NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| Athyrium anisopterum | Chloroplast | 3 | C-to-U: 1 NA: 1 U-to-C: 1 | 119960-125068 124105 125067 | CDS NA NA | - + | NA C-to-U U-to-C | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| Athyrium opacum | Chloroplast | 2 | NA: 1 U-to-C: 1 | 119720-124858 123865 | NA CDS | + - | U-to-C NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| Athyrium sheareri | Chloroplast | 3 | C-to-U: 1 NA: 1 U-to-C: 1 | 119848-124962 123993 124961 | CDS NA NA | - + | NA C-to-U U-to-C | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| Athyrium sinense | Chloroplast | 3 | C-to-U: 1 NA: 1 U-to-C: 1 | 119945-125053 124090 125052 | CDS NA NA | - + | NA U-to-C C-to-U | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| Austroblechnum melanocaulon | Chloroplast | 3 | C-to-U: 1 NA: 1 U-to-C: 1 | 119371-124482 123519 124481 | NA NA CDS | + - | C-to-U U-to-C NA | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| Christella appendiculata | Chloroplast | 3 | C-to-U: 1 NA: 1 U-to-C: 1 | 120170-125257 124294 125256 | CDS NA NA | - + | NA U-to-C C-to-U | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| Cyrtomium devexiscapulae | Chloroplast | 3 | C-to-U: 1 NA: 1 U-to-C: 1 | 120116-125221 124258 125220 | NA NA CDS | + - | U-to-C C-to-U NA | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| Cyrtomium falcatum | Chloroplast | 3 | C-to-U: 1 NA: 1 U-to-C: 1 | 120233-125338 124375 125337 | NA CDS NA | + - | C-to-U NA U-to-C | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| Cystopteris chinensis | Chloroplast | 3 | C-to-U: 1 NA: 1 U-to-C: 1 | 119933-125038 124075 125037 | NA NA CDS | + - | C-to-U U-to-C NA | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| Deparia lancea | Chloroplast | 3 | C-to-U: 1 NA: 1 U-to-C: 1 | 119767-124872 123909 124871 | NA NA CDS | + - | C-to-U U-to-C NA | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| Deparia pycnosora | Chloroplast | 3 | C-to-U: 1 NA: 1 U-to-C: 1 | 119953-125058 124095 125057 | NA NA CDS | + - | C-to-U U-to-C NA | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| Deparia viridifrons | Chloroplast | 3 | C-to-U: 1 NA: 1 U-to-C: 1 | 119754-124859 123896 124858 | NA NA CDS | + - | U-to-C C-to-U NA | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| Diplaziopsis cavaleriana | Chloroplast | 2 | C-to-U: 1 NA: 1 | 120489-125585 125584 | CDS NA | - + | NA C-to-U | NA=>NA NA=>NA | NA=>NA NA=>NA |
| Diplaziopsis javanica | Chloroplast | 3 | C-to-U: 1 NA: 1 U-to-C: 1 | 120433-125529 124566 125528 | CDS NA NA | - + | NA U-to-C C-to-U | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| Diplazium bellum | Chloroplast | 3 | C-to-U: 1 NA: 1 U-to-C: 1 | 120137-125242 124279 125241 | NA CDS NA | + - | U-to-C NA C-to-U | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| Diplazium dilatatum | Chloroplast | 3 | C-to-U: 1 NA: 1 U-to-C: 1 | 119865-124973 124010 124972 | NA CDS NA | + - | C-to-U NA U-to-C | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| Diplazium dushanense | Chloroplast | 2 | NA: 1 U-to-C: 1 | 119447-124561 123598 | NA CDS | + - | U-to-C NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| Diplazium striatum | Chloroplast | 3 | C-to-U: 1 NA: 1 U-to-C: 1 | 119492-124591 123628 124590 | CDS NA NA | - + | NA C-to-U U-to-C | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| Diplazium unilobum | Chloroplast | 3 | C-to-U: 1 NA: 1 U-to-C: 1 | 120045-125162 124199 125161 | CDS NA NA | - + | NA U-to-C C-to-U | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| Diplopterygium glaucum | Chloroplast | 1 | NA: 1 | 128735-133804 | NA | - | NA | NA=>NA | NA=>NA |
| Dryopteris decipiens | Chloroplast | 3 | C-to-U: 1 NA: 1 U-to-C: 1 | 119751-124853 123890 124852 | NA CDS NA | + - | U-to-C NA C-to-U | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| Elaeis guineensis | Chloroplast | 5 | C-to-U: 2 U-to-C: 3 | 126783 127388 127797 127817 127823 | CDS CDS CDS CDS CDS | NA | C-to-U C-to-U U-to-C U-to-C U-to-C | UAC=>UAU AUC=>AUU GAU=>GAC CUU=>CCU AUU=>ACU | Y=>Y I=>I D=>D L=>P I=>T |
| Homalosorus pycnocarpos | Chloroplast | 3 | C-to-U: 1 NA: 1 U-to-C: 1 | 120733-125826 124863 125825 | NA NA CDS | + - | U-to-C C-to-U NA | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| Hymenasplenium unilaterale | Chloroplast | 3 | C-to-U: 1 NA: 1 U-to-C: 1 | 120417-125549 124580 125548 | NA CDS NA | + - | U-to-C NA C-to-U | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| Hypodematium crenatum | Chloroplast | 3 | C-to-U: 1 NA: 1 U-to-C: 1 | 118886-123979 123016 123978 | NA CDS NA | + - | U-to-C NA C-to-U | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| Isoetes flaccida | Chloroplast | 1 | NA: 1 | 105019-109587 | CDS | + | NA | NA=>NA | NA=>NA |
| Jenufa minuta | Chloroplast | 1 | NA: 1 | 186604-195219 | CDS | + | NA | NA=>NA | NA=>NA |
| Lepisorus clathratus | Chloroplast | 4 | C-to-U: 2 NA: 1 U-to-C: 1 | 122143-127245 122145 126285 127244 | NA NA NA CDS | + - | C-to-U U-to-C C-to-U NA | NA=>NA NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA NA=>NA |
| Macrothelypteris torresiana | Chloroplast | 3 | C-to-U: 1 NA: 1 U-to-C: 1 | 119859-124958 123995 124957 | NA NA CDS | + - | U-to-C C-to-U NA | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| Marsilea crenata | Chloroplast | 1 | NA: 1 | 123349-128136 | CDS | - | NA | NA=>NA | NA=>NA |
| Matteuccia struthiopteris | Chloroplast | 3 | C-to-U: 1 NA: 1 U-to-C: 1 | 119550-124649 123686 124648 | NA CDS NA | + - | C-to-U NA U-to-C | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| Myriopteris lindheimeri | Chloroplast | 3 | C-to-U: 1 NA: 1 U-to-C: 1 | 122312-127399 126442 127398 | NA CDS NA | + - | C-to-U NA U-to-C | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| Onoclea sensibilis | Chloroplast | 3 | C-to-U: 1 NA: 1 U-to-C: 1 | 118071-123170 122207 123169 | NA NA CDS | + - | C-to-U U-to-C NA | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| Ophioglossum californicum | Chloroplast | 2 | NA: 2 | 120824-125653 | CDS CDS | - | NA NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| Orobanche californica | Chloroplast | 1 | NA: 1 | 91516-96969 | CDS | - | NA | NA=>NA | NA=>NA |
| Phalaenopsis aphrodite subsp. formosana | Chloroplast | 1 | NA: 1 | 117761-123211 | NA | - | NA | NA=>NA | NA=>NA |
| Phalaenopsis equestris | Chloroplast | 1 | NA: 1 | 117631-123122 | NA | - | NA | NA=>NA | NA=>NA |
| Picea asperata | Chloroplast | 1 | NA: 1 | 98389-103713 | CDS | + | NA | NA=>NA | NA=>NA |
| Picea crassifolia | Chloroplast | 1 | NA: 1 | 98384-103708 | CDS | + | NA | NA=>NA | NA=>NA |
| Pseudophegopteris aurita | Chloroplast | 3 | C-to-U: 1 NA: 1 U-to-C: 1 | 118858-123951 122988 123950 | CDS NA NA | - + | NA U-to-C C-to-U | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| Pteridium aquilinum subsp. aquilinum | Chloroplast | 3 | NA: 1 U-to-C: 2 | 121260-126323 125360 126322 | NA CDS NA | + - | U-to-C NA U-to-C | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| Rhachidosorus consimilis | Chloroplast | 3 | C-to-U: 1 NA: 1 U-to-C: 1 | 121011-126086 125123 126085 | NA CDS NA | + - | U-to-C NA C-to-U | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| Schizaea elegans | Chloroplast | 4 | U-to-C: 4 | 110388 112719 119359 121690 | NA CDS NA CDS | + | U-to-C U-to-C U-to-C U-to-C | NA=>NA UAA=>CAA NA=>NA UAG=>CAG | NA=>NA TERM=>Q NA=>NA TERM=>Q |
| Schizaea pectinata | Chloroplast | 2 | NA: 2 | 107876-112789 116823-121736 | CDS CDS | + - | NA NA | NA=>NA NA=>NA | NA=>NA NA=>NA |
| Stegnogramma sagittifolia | Chloroplast | 3 | C-to-U: 1 NA: 1 U-to-C: 1 | 119698-124767 123804 124766 | NA CDS NA | + - | U-to-C NA C-to-U | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| Takakia lepidozioides | Chloroplast | 1 | NA: 1 | 130661-135673 | NA | - | NA | NA=>NA | NA=>NA |
| Woodsia macrochlaena | Chloroplast | 3 | C-to-U: 1 NA: 1 U-to-C: 1 | 119774-124879 123916 124878 | NA CDS NA | + - | U-to-C NA C-to-U | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| Woodsia polystichoides | Chloroplast | 3 | C-to-U: 1 NA: 1 U-to-C: 1 | 119438-124531 123568 124530 | NA CDS NA | + - | C-to-U NA U-to-C | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| Woodwardia unigemmata | Chloroplast | 3 | C-to-U: 1 NA: 1 U-to-C: 1 | 121044-126158 125195 126157 | CDS NA NA | - + | NA C-to-U U-to-C | NA=>NA NA=>NA NA=>NA | NA=>NA NA=>NA NA=>NA |
| Species | Organelle | Editing Events | Editing Types | Genomic Position | Region | Strand | Type | Codons | Amino Acid |
( NA = Data Not Available )