sdh4 - Plant Editosome Database - BIG Data Center

Summary

Gene: sdh4
Function: Succinate dehydrogenase
Species: 16
Editing Factors:2 (ORRM4, SlORRM4)
Editing Types:
C-to-U (101)
U-to-C (6)
Editing Events: 123 (C-to-U: 101   NA: 16   U-to-C: 6)
External Link: NCBI Gene
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid
Asclepias syriacaMitochondrion2
NA: 2
214018-214449CDS
CDS
+NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Batis maritimaMitochondrion1
NA: 1
250562-250969CDS+NANA=>NANA=>TERM
Cannabis sativaMitochondrion2
NA: 2
216688-217230CDS
CDS
+NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Cucurbita pepoMitochondrion1
C-to-U: 1
950932CDS+C-to-UCGG=>UGGR=>W
Ginkgo bilobaMitochondrion8
C-to-U: 7
NA: 1
335887-336282
335894
335915
335919
335922
335925
335928
335933
CDS
NA
NA
NA
NA
NA
NA
NA
+NA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Liriodendron tulipiferaMitochondrion2
C-to-U: 2
5734-6138CDS
CDS
+C-to-U
C-to-U
NA=>NA
NA=>NA
NA=>TERM
NA=>TERM
Lotus japonicusMitochondrion4
C-to-U: 4
298960
298962
NA
NA
NA
NA
-C-to-U
C-to-U
C-to-U
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Millettia pinnataMitochondrion4
C-to-U: 4
101027
101029
NA
NA
NA
NA
-C-to-U
C-to-U
C-to-U
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Nelumbo nuciferaMitochondrion3
C-to-U: 3
436111
436121
436285
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
CGG=>UGG
CCA=>CUA
CCA=>CUA
R=>W
P=>L
P=>L
Nothoceros aenigmaticusMitochondrion2
U-to-C: 2
10062CDS
CDS
+U-to-C
U-to-C
UAA=>CAA
UAA=>CAA
TERM=>Q
TERM=>Q
Ophioglossum californicumMitochondrion30
C-to-U: 30
199480
199481
199509
199517
199569
199575
199584
199605
199631
199640
199670
199697
199749
199759
199767
5'UTR
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
5'UTR
CDS
5'UTR
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
5'UTR
CDS
CDS
CDS
CDS
CDS
NAC-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
NA=>NA
CAU=>UAU
ACG=>AUG
CAU=>UAU
CCU=>CUU
UCC=>UUC
UCG=>UUG
CAU=>UAU
CGG=>UGG
UCA=>UUA
CCU=>CUU
CGG=>UGG
NA=>NA
CAU=>UAU
NA=>NA
CCA=>CUA
UCC=>UCU
CCU=>CUU
UCC=>UUC
ACG=>AUG
CAU=>UAU
CAU=>UAU
CGG=>UGG
UCG=>UUG
NA=>NA
CGG=>UGG
UCA=>UUA
CCU=>CUU
CCA=>CUA
UCC=>UCU
NA=>NA
H=>Y
T=>M
H=>Y
P=>L
S=>F
S=>L
H=>Y
R=>W
S=>L
P=>L
R=>W
NA=>NA
H=>Y
NA=>NA
P=>L
S=>S
P=>L
S=>F
T=>M
H=>Y
H=>Y
R=>W
S=>L
NA=>NA
R=>W
S=>L
P=>L
P=>L
S=>S
Phaeoceros laevisMitochondrion3
NA: 1
U-to-C: 2
133583-133843
133660
133804
NA
CDS
NA
+
-
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Phlegmariurus squarrosusMitochondrion2
C-to-U: 2
371737
371994
CDS
CDS
+C-to-U
C-to-U
CAA=>UAA
ACG=>AUG
Q=>TERM
T=>M
Psilotum nudumMitochondrion8
C-to-U: 8
216764
216785
216786
216790
216929
216931
216942
216949
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
NAC-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCG=>UUG
GCC=>GCU
CAA=>UAA
UUC=>UUU
UCG=>UUG
GUC=>GUU
CUC=>UUC
CCG=>UCG
S=>L
A=>A
Q=>TERM
F=>F
S=>L
V=>V
L=>F
P=>S
Welwitschia mirabilisMitochondrion1
NA: 1
48671-49009CDS-NANA=>NANA=>TERM
Ziziphus jujubaMitochondrion2
NA: 2
1888-2295CDS
CDS
+NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)