rps2 - Plant Editosome Database - BIG Data Center

Summary

Gene: rps2
Function: Ribosomal protein
Species: 73
Editing Factors:2 (OsSLC1, YL)
Editing Types:
C-to-U (165)
U-to-C (128)
Editing Events: 344 (C-to-U: 165   U-to-C: 128   NA: 51)
External Link: NCBI Gene
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid
Adiantum capillus-venerisChloroplast1
NA: 1
14955-15662CDS-NANA=>NANA=>NA
Alsophila spinulosaChloroplast1
NA: 1
15151-15903CDS-NANA=>NANA=>NA
Ampelopteris proliferaChloroplast5
NA: 1
U-to-C: 4
15293-16009
15304
15493
15580
15616
NA
NA
CDS
NA
NA
+
-
U-to-C
U-to-C
NA
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Anthoceros angustusChloroplast19
C-to-U: 9
U-to-C: 10
14201
14272
14273
14293
14343
14500
14548
14671
14683
14694
14697
14734
14775
14824
14827
14839
14848
14860
14862
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
U-to-C
U-to-C
U-to-C
C-to-U
C-to-U
U-to-C
C-to-U
C-to-U
U-to-C
U-to-C
U-to-C
U-to-C
C-to-U
U-to-C
C-to-U
U-to-C
C-to-U
C-to-U
UCA=>UUA
UCA=>CCA
CUA=>CCA
UAA=>CAA
UCG=>UUG
CCA=>CUA
UAU=>UAC
UCA=>UUA
UCA=>UUA
CUU=>CCU
CUU=>CUC
UAG=>CAG
UUA=>UCA
ACU=>AUU
UAA=>CAA
ACA=>AUA
UUC=>CUC
ACU=>AUU
UCC=>UUC
S=>L
S=>P
L=>P
TERM=>Q
S=>L
P=>L
Y=>Y
S=>L
S=>L
L=>P
L=>L
TERM=>Q
L=>S
T=>I
TERM=>Q
T=>I
F=>L
T=>I
S=>F
Asplenium pekinenseChloroplast4
NA: 1
U-to-C: 3
15172-15888
15372
15459
15495
NA
NA
NA
CDS
+
-
U-to-C
U-to-C
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Asplenium prolongatumChloroplast4
NA: 1
U-to-C: 3
14927-15643
15127
15214
15250
CDS
NA
NA
NA
-
+
NA
U-to-C
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium anisopterumChloroplast4
NA: 1
U-to-C: 3
15222-15938
15422
15509
15545
CDS
NA
NA
NA
-
+
NA
U-to-C
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium opacumChloroplast4
NA: 1
U-to-C: 3
15273-15989
15473
15560
15596
NA
NA
CDS
NA
+
-
U-to-C
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium sheareriChloroplast4
NA: 1
U-to-C: 3
15239-15955
15439
15526
15562
NA
CDS
NA
NA
+
-
U-to-C
NA
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium sinenseChloroplast4
NA: 1
U-to-C: 3
15245-15961
15445
15532
15568
CDS
NA
NA
NA
-
+
NA
U-to-C
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Austroblechnum melanocaulonChloroplast4
C-to-U: 1
NA: 1
U-to-C: 2
15256-15972
15258
15456
15543
NA
NA
CDS
NA
+
-
C-to-U
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Boulardia latisquamaPlastid1
NA: 1
5746-6459CDS-NANA=>NANA=>NA
Christella appendiculataChloroplast5
NA: 1
U-to-C: 4
15235-15951
15246
15435
15522
15558
CDS
NA
NA
NA
NA
-
+
NA
U-to-C
U-to-C
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Cocos nuciferaChloroplast4
C-to-U: 4
16468
16582
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
ACA=>AUA
ACA=>AUA
UCA=>UUA
S=>L
T=>I
T=>I
S=>L
Cuscuta gronoviiChloroplast1
C-to-U: 1
7626CDS-C-to-UACA=>AUAT=>I
Cuscuta reflexaChloroplast1
C-to-U: 1
12620CDS-C-to-UACA=>AUAT=>I
Cyrtomium devexiscapulaeChloroplast4
NA: 1
U-to-C: 3
15347-16063
15547
15634
15670
CDS
NA
NA
NA
-
+
NA
U-to-C
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Cyrtomium falcatumChloroplast4
NA: 1
U-to-C: 3
15486-16202
15686
15773
15809
CDS
NA
NA
NA
-
+
NA
U-to-C
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Cystopteris chinensisChloroplast4
NA: 1
U-to-C: 3
15310-16026
15510
15597
15633
NA
NA
CDS
NA
+
-
U-to-C
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deparia lanceaChloroplast4
NA: 1
U-to-C: 3
14933-15649
15133
15220
15256
CDS
NA
NA
NA
-
+
NA
U-to-C
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deparia pycnosoraChloroplast4
NA: 1
U-to-C: 3
15210-15926
15410
15497
15533
NA
NA
CDS
NA
+
-
U-to-C
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deparia viridifronsChloroplast4
NA: 1
U-to-C: 3
15265-15981
15465
15552
15588
NA
NA
CDS
NA
+
-
U-to-C
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplaziopsis cavalerianaChloroplast4
NA: 1
U-to-C: 3
15372-16088
15572
15659
15695
NA
CDS
NA
NA
+
-
U-to-C
NA
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplaziopsis javanicaChloroplast4
NA: 1
U-to-C: 3
15422-16138
15622
15709
15745
NA
CDS
NA
NA
+
-
U-to-C
NA
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium bellumChloroplast4
NA: 1
U-to-C: 3
15209-15925
15409
15496
15532
NA
NA
CDS
NA
+
-
U-to-C
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium dilatatumChloroplast4
NA: 1
U-to-C: 3
15163-15879
15363
15450
15486
NA
NA
CDS
NA
+
-
U-to-C
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium dushanenseChloroplast4
NA: 1
U-to-C: 3
15196-15921
15405
15492
15528
NA
NA
CDS
NA
+
-
U-to-C
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium striatumChloroplast4
NA: 1
U-to-C: 3
15192-15908
15392
15479
15515
NA
NA
CDS
NA
+
-
U-to-C
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium unilobumChloroplast4
NA: 1
U-to-C: 3
15205-15930
15414
15501
15537
NA
NA
NA
CDS
+
-
U-to-C
U-to-C
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplopterygium glaucumChloroplast1
NA: 1
30089-30844NA-NANA=>NANA=>NA
Dryopteris decipiensChloroplast4
NA: 1
U-to-C: 3
15134-15850
15334
15421
15457
NA
NA
CDS
NA
+
-
U-to-C
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Forsythia suspensaChloroplast1
C-to-U: 1
17189CDS-C-to-UUCA=>UUAS=>L
Ginkgo bilobaMitochondrion1
NA: 1
124722-125417CDS-NANA=>NANA=>NA
Hevea brasiliensisChloroplast2
C-to-U: 2
25947
26061
CDS
CDS
+C-to-U
C-to-U
UCA=>UUA
ACA=>AUA
S=>L
T=>I
Homalosorus pycnocarposChloroplast4
NA: 1
U-to-C: 3
15406-16122
15606
15693
15729
NA
CDS
NA
NA
+
-
U-to-C
NA
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Hymenasplenium unilateraleChloroplast4
NA: 1
U-to-C: 3
15242-15958
15442
15529
15565
NA
NA
NA
CDS
+
-
U-to-C
U-to-C
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Hypodematium crenatumChloroplast4
NA: 1
U-to-C: 3
15137-15856
15340
15427
15463
NA
NA
NA
CDS
+
-
U-to-C
U-to-C
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Hypseocharis bilobataChloroplast3
C-to-U: 3
71552
71911
72101
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
CUU=>UUU
UCA=>UUA
CCG=>UCG
L=>F
S=>L
P=>S
Jenufa minutaChloroplast1
NA: 1
58711-61596CDS-NANA=>NANA=>NA
Lepisorus clathratusChloroplast4
NA: 1
U-to-C: 3
14033-14749
14233
14320
14356
NA
CDS
NA
NA
+
-
U-to-C
NA
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Linum usitatissimumChloroplast1
C-to-U: 1
10044CDS-C-to-UUCA=>UUAS=>L
Macrothelypteris torresianaChloroplast4
NA: 1
U-to-C: 3
15333-16049
15533
15620
15656
CDS
NA
NA
NA
-
+
NA
U-to-C
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Marsilea crenataChloroplast1
NA: 1
18058-18768CDS-NANA=>NANA=>NA
Matteuccia struthiopterisChloroplast4
NA: 1
U-to-C: 3
15328-16044
15528
15615
15651
NA
CDS
NA
NA
+
-
U-to-C
NA
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Millettia pinnataChloroplast4
C-to-U: 4
44881
44995
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
ACA=>AUA
ACA=>AUA
S=>L
S=>L
T=>I
T=>I
Myriopteris lindheimeriChloroplast3
NA: 1
U-to-C: 2
15560-16276
15760
15847
NA
NA
CDS
+
-
U-to-C
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Nelumbo nuciferaMitochondrion10
C-to-U: 10
182456
182477
182531
182628
182714
182729
182735
182800
182824
182831
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
CCU=>UCU
UCG=>UUG
CCC=>CUC
ACG=>AUG
CGU=>UGU
UCA=>UUA
GCA=>GUA
UCC=>UUC
AUC=>AUU
S=>L
P=>S
S=>L
P=>L
U=>M
R=>C
S=>L
A=>V
S=>F
I=>I
Nicotiana sylvestrisChloroplast4
C-to-U: 4
16693
16807
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
ACA=>AUA
ACA=>AUA
UCA=>UUA
S=>L
T=>I
T=>I
S=>L
Nicotiana tomentosiformisChloroplast2
C-to-U: 2
16650
16764
CDS
CDS
-C-to-U
C-to-U
UCA=>UUA
ACA=>AUA
S=>L
T=>I
Nothoceros aenigmaticusPlastid2
NA: 2
18957-19664NA
NA
+NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Onoclea sensibilisChloroplast4
NA: 1
U-to-C: 3
15265-15981
15465
15552
15588
CDS
NA
NA
NA
-
+
NA
U-to-C
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Ophioglossum californicumMitochondrion28
C-to-U: 26
U-to-C: 2
338484
338518
338608
338612
338778
338855
338879
338989
339017
339027
339079
339121
339144
339245
CDS
5'UTR
CDS
5'UTR
CDS
5'UTR
CDS
CDS
5'UTR
CDS
CDS
CDS
5'UTR
CDS
5'UTR
CDS
CDS
CDS
CDS
CDS
5'UTR
CDS
5'UTR
CDS
CDS
CDS
CDS
CDS
NAC-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
U-to-C
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
U-to-C
C-to-U
CGU=>UGU
NA=>NA
CGU=>UGU
NA=>NA
UCG=>UUG
NA=>NA
CCC=>CCU
UAG=>CAG
NA=>NA
CCA=>CUA
CGU=>UGU
ACC=>ACU
NA=>NA
UCG=>UUG
NA=>NA
CCU=>CUU
AAC=>AAU
CCA=>CUA
CGU=>UGU
ACC=>ACU
NA=>NA
CGU=>UGU
NA=>NA
CCU=>CUU
AAC=>AAU
CCC=>CCU
UAG=>CAG
CGU=>UGU
R=>C
NA=>NA
R=>C
NA=>NA
S=>L
NA=>NA
P=>P
TERM=>Q
NA=>NA
P=>L
R=>C
T=>T
NA=>NA
S=>L
NA=>NA
P=>L
N=>N
P=>L
R=>C
T=>T
NA=>NA
R=>C
NA=>NA
P=>L
N=>N
P=>P
TERM=>Q
R=>C
Oryza sativa Japonica GroupMitochondrion10
C-to-U: 10
184837
184863
184870
184894
184965
185160
185214
185235
185436
185628
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
ACC=>AUC
UCC=>UUC
GCG=>GUG
CCC=>CUC
UCG=>UUG
UCG=>UUG
CGU=>UGU
GCA=>GUA
CGU=>UGU
CCU=>UCU
T=>I
S=>F
A=>V
P=>L
S=>L
S=>L
R=>C
A=>V
R=>C
P=>S
Panicum virgatumChloroplast1
C-to-U: 1
31316CDSNAC-to-UNA=>NAT=>I
Pelargonium alternansChloroplast3
C-to-U: 3
22622
22981
23171
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
CCG=>UCG
CUU=>UUU
UCA=>UUA
P=>S
L=>F
S=>L
Phalaenopsis equestrisChloroplast1
C-to-U: 1
16856CDS-C-to-UACA=>AUAT=>I
Phlegmariurus squarrosusMitochondrion1
C-to-U: 1
126162CDS+C-to-UCAA=>UAAQ=>TERM
Pseudophegopteris auritaChloroplast4
NA: 1
U-to-C: 3
15040-15756
15240
15327
15363
NA
CDS
NA
NA
+
-
U-to-C
NA
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Psilotum nudumMitochondrion14
C-to-U: 14
170814
171106
171398
171427
171452
171517
171592
171619
171691
171727
171777
171787
171823
172131
3'UTR
CDS
CDS
5'UTR
CDS
CDS
CDS
CDS
CDS
3'UTR
CDS
CDS
CDS
CDS
NAC-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
NA=>NA
UCG=>UUG
UCA=>UUA
NA=>NA
CGU=>UGU
AGC=>AGU
UCA=>UUA
CCA=>UCA
UCG=>UUG
NA=>NA
UCA=>UUA
CCC=>CUC
UCG=>UUG
CCA=>CUA
NA=>NA
S=>L
S=>L
NA=>NA
R=>C
S=>S
S=>L
P=>S
S=>L
NA=>NA
S=>L
P=>L
S=>L
P=>L
Pteridium aquilinum subsp. aquilinumChloroplast4
NA: 1
U-to-C: 3
15351-16067
15551
15638
15674
NA
CDS
NA
NA
+
-
U-to-C
NA
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Rhachidosorus consimilisChloroplast4
NA: 1
U-to-C: 3
15341-16057
15541
15628
15664
NA
NA
NA
CDS
+
-
U-to-C
U-to-C
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Schizaea elegansChloroplast2
C-to-U: 1
NA: 1
8866-9576
9575
CDS
NA
-
+
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Schizaea pectinataChloroplast2
C-to-U: 1
NA: 1
8105-8815
8814
CDS
NA
-
+
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Silene conicaChloroplast1
C-to-U: 1
14248CDS-C-to-UUCA=>UUAS=>L
Silene latifoliaChloroplast1
C-to-U: 1
15000CDS-C-to-UUCA=>UUAS=>L
Silene noctifloraChloroplast1
C-to-U: 1
14995CDS-C-to-UUCA=>UUAS=>L
Silene vulgarisChloroplast2
C-to-U: 2
14939CDS
CDS
-C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
S=>L
S=>L
Solanum lycopersicumChloroplast6
C-to-U: 6
16288
16402
CDS
CDS
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
ACA=>AUA
ACA=>AUA
UCA=>UUA
UCA=>UUA
ACA=>AUA
S=>L
T=>I
T=>I
S=>L
S=>L
T=>I
Stegnogramma sagittifoliaChloroplast4
NA: 1
U-to-C: 3
15259-15966
15450
15537
15573
CDS
NA
NA
NA
-
+
NA
U-to-C
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Woodsia macrochlaenaChloroplast4
NA: 1
U-to-C: 3
15179-15895
15379
15466
15502
NA
CDS
NA
NA
+
-
U-to-C
NA
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Woodsia polystichoidesChloroplast4
NA: 1
U-to-C: 3
15201-15917
15401
15488
15524
NA
CDS
NA
NA
+
-
U-to-C
NA
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Woodwardia unigemmataChloroplast5
C-to-U: 1
NA: 1
U-to-C: 3
15246-15962
15248
15446
15533
15569
NA
CDS
NA
NA
NA
+
-
U-to-C
NA
U-to-C
U-to-C
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)