rpoA - Plant Editosome Database - BIG Data Center

Summary

Gene: rpoA
Function: RNA polymerase
Species: 65
Editing Factors:18 (CLB19, CREF7, DYW2, ECB2, HEMC, ISE2, MEF37, MORF2, MORF9, NUWA, ORRM1, ORRM1,ORRM6, ORRM6, OTP90, OZ1, PGN, SlORRM4, YL)
Editing Types:
C-to-U (66)
U-to-C (44)
Editing Events: 160 (C-to-U: 66   NA: 50   U-to-C: 44)
External Link: NCBI Gene
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid
Adiantum capillus-venerisChloroplast1
NA: 1
73494-74531CDS-NANA=>NANA=>NA
Alsophila spinulosaChloroplast1
NA: 1
77545-78561CDS-NANA=>NANA=>NA
Ampelopteris proliferaChloroplast2
NA: 1
U-to-C: 1
74570-75592
75352
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Anthoceros angustusChloroplast19
C-to-U: 11
NA: 1
U-to-C: 7
96875-97897
97005
97009
97043
97221
97224
97266
97267
97272
97312
97371
97389
97588
97611
97635
97740
97750
97795
97807
NA
NA
NA
NA
NA
NA
NA
NA
NA
CDS
NA
NA
NA
NA
NA
NA
NA
NA
NA
+
-
U-to-C
U-to-C
C-to-U
C-to-U
C-to-U
U-to-C
C-to-U
U-to-C
C-to-U
NA
C-to-U
C-to-U
C-to-U
U-to-C
C-to-U
C-to-U
C-to-U
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Arabidopsis lyrata subsp. lyrata MN47Chloroplast1
C-to-U: 1
78983NA+C-to-UNA=>NANA=>NA
Arabidopsis thalianaChloroplast2
C-to-U: 2
78691CDS
CDS
-C-to-U
C-to-U
UCU=>UUU
UCU=>UUU
S=>F
S=>F
Asplenium pekinenseChloroplast2
NA: 1
U-to-C: 1
73094-74116
73876
NA
CDS
+
-
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Asplenium prolongatumChloroplast2
NA: 1
U-to-C: 1
73341-74366
74126
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium anisopterumChloroplast2
NA: 1
U-to-C: 1
74150-75172
74932
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium opacumChloroplast2
NA: 1
U-to-C: 1
74010-75032
74792
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium sheareriChloroplast2
NA: 1
U-to-C: 1
74153-75175
74935
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium sinenseChloroplast2
NA: 1
U-to-C: 1
74102-75124
74884
NA
CDS
+
-
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Austroblechnum melanocaulonChloroplast2
NA: 1
U-to-C: 1
74246-75262
75022
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Christella appendiculataChloroplast2
NA: 1
U-to-C: 1
74386-75402
75162
NA
CDS
+
-
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Cocos nuciferaChloroplast8
C-to-U: 8
77899
78202
78361
78529
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCU=>UUU
UCA=>UUA
UCC=>UUC
UCA=>UUA
UCU=>UUU
UCA=>UUA
UCC=>UUC
UCA=>UUA
S=>F
S=>L
S=>F
S=>L
S=>F
S=>L
S=>F
S=>L
Cypripedium macranthosChloroplast1
C-to-U: 1
79898CDS-C-to-UUCA=>UUAS=>L
Cyrtomium devexiscapulaeChloroplast2
NA: 1
U-to-C: 1
74043-75059
74060
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Cystopteris chinensisChloroplast2
NA: 1
U-to-C: 1
74303-75325
75085
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Dendrobium officinaleChloroplast2
C-to-U: 2
79099
79561
CDS
CDS
-C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
S=>L
S=>L
Deparia lanceaChloroplast2
NA: 1
U-to-C: 1
73912-74940
74700
NA
CDS
+
-
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deparia pycnosoraChloroplast2
NA: 1
U-to-C: 1
74224-75246
75006
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deparia viridifronsChloroplast2
NA: 1
U-to-C: 1
74203-75225
74985
NA
CDS
+
-
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deschampsia antarcticaPlastid1
C-to-U: 1
73782CDS-C-to-UCUC=>UUCL=>F
Diplaziopsis cavalerianaChloroplast2
NA: 1
U-to-C: 1
74618-75640
75400
NA
CDS
+
-
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplaziopsis javanicaChloroplast2
NA: 1
U-to-C: 1
74889-75911
75671
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium bellumChloroplast2
NA: 1
U-to-C: 1
74174-75196
74956
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium dilatatumChloroplast2
NA: 1
U-to-C: 1
74080-75102
74862
NA
CDS
+
-
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium dushanenseChloroplast2
NA: 1
U-to-C: 1
74108-75130
74890
NA
CDS
+
-
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium striatumChloroplast2
NA: 1
U-to-C: 1
73657-74679
74439
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium unilobumChloroplast2
NA: 1
U-to-C: 1
74072-75094
74854
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplopterygium glaucumChloroplast1
NA: 1
91430-92464NA-NANA=>NANA=>NA
Dryopteris decipiensChloroplast1
NA: 1
74143-75144CDS-NANA=>NANA=>NA
Forsythia suspensaChloroplast1
C-to-U: 1
81225CDS-C-to-UUCA=>UUAS=>L
Hevea brasiliensisChloroplast2
C-to-U: 2
82831
83467
CDS
CDS
-C-to-U
C-to-U
UCU=>UUU
UCA=>UUA
S=>F
S=>L
Homalosorus pycnocarposChloroplast2
NA: 1
U-to-C: 1
74892-75914
75674
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Hymenasplenium unilateraleChloroplast2
NA: 1
U-to-C: 1
75028-76035
75795
NA
CDS
+
-
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Hypodematium crenatumChloroplast1
NA: 1
73806-74828CDS-NANA=>NANA=>NA
Isoetes flaccidaChloroplast1
NA: 1
7402-8427CDS+NANA=>NANA=>NA
Linum usitatissimumChloroplast2
C-to-U: 2
71370
71427
CDS
CDS
-C-to-U
C-to-U
UCG=>UUG
UCA=>UUA
S=>L
S=>L
Lygodium japonicumChloroplast1
NA: 1
76589-77599CDS-NANA=>NANA=>NA
Macrothelypteris torresianaChloroplast2
NA: 1
U-to-C: 1
74187-75209
74969
NA
CDS
+
-
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Marsilea crenataChloroplast1
NA: 1
79139-80164CDS-NANA=>NANA=>NA
Matteuccia struthiopterisChloroplast2
NA: 1
U-to-C: 1
73545-74567
74327
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Myriopteris lindheimeriChloroplast2
NA: 1
U-to-C: 1
74373-75401
75161
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Nicotiana sylvestrisChloroplast2
C-to-U: 2
80640CDS
CDS
-C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
S=>L
S=>L
Nicotiana tomentosiformisChloroplast1
C-to-U: 1
80394CDS-C-to-UUCA=>UUAS=>L
Nothoceros aenigmaticusPlastid2
NA: 2
98677-99720NA
NA
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Onoclea sensibilisChloroplast2
NA: 1
U-to-C: 1
73206-74225
73985
NA
CDS
+
-
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Panicum virgatumChloroplast1
C-to-U: 1
76054CDSNAC-to-UNA=>NAS=>F
Phalaenopsis equestrisChloroplast3
C-to-U: 3
79918
80380
80548
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
UCU=>UUU
UCA=>UUA
UCA=>UUA
S=>F
S=>L
S=>L
Pseudophegopteris auritaChloroplast2
NA: 1
U-to-C: 1
73846-74862
74622
NA
CDS
+
-
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Pteridium aquilinum subsp. aquilinumChloroplast2
C-to-U: 1
NA: 1
75800-76843
76603
CDS
NA
-
+
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Rhachidosorus consimilisChloroplast2
NA: 1
U-to-C: 1
74955-75971
75731
NA
CDS
+
-
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Schizaea elegansChloroplast3
NA: 1
U-to-C: 2
66570-67580
67271
67340
NA
NA
CDS
+
-
U-to-C
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Schizaea pectinataChloroplast3
NA: 1
U-to-C: 2
64316-65323
65014
65083
NA
NA
CDS
+
-
U-to-C
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Silene conicaChloroplast1
C-to-U: 1
74191CDS-C-to-UUCU=>UUUS=>F
Silene noctifloraChloroplast1
C-to-U: 1
74206CDS-C-to-UUCU=>UUUS=>F
Silene vulgarisChloroplast2
C-to-U: 2
77061CDS
CDS
-C-to-U
C-to-U
UCU=>UUU
UCU=>UUU
S=>F
S=>F
Solanum lycopersicumChloroplast3
C-to-U: 3
80030CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
UCA=>UUA
S=>L
S=>L
S=>L
Stegnogramma sagittifoliaChloroplast2
NA: 1
U-to-C: 1
73978-75000
74760
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Takakia lepidozioidesChloroplast1
NA: 1
96973-97998NA-NANA=>NANA=>NA
Woodsia macrochlaenaChloroplast2
NA: 1
U-to-C: 1
74097-75119
74879
NA
CDS
+
-
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Woodsia polystichoidesChloroplast2
NA: 1
U-to-C: 1
73807-74829
74589
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Woodwardia unigemmataChloroplast2
NA: 1
U-to-C: 1
74075-75097
74857
NA
CDS
+
-
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)