rpl5 - Plant Editosome Database - BIG Data Center

Summary

Gene: rpl5
Function: Ribosomal protein
Species: 16
Editing Factors:13 (DYW2, MEF37, MEF8, MORF1, MORF3, MORF8, NUWA, ORRM2, ORRM3, ORRM4, OTP90, PGN, REME1)
Editing Types:
C-to-U (297)
U-to-C (5)
Editing Events: 306 (C-to-U: 297   U-to-C: 5   NA: 4)
External Link: NCBI Gene
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid
Arabidopsis thalianaMitochondrion20
C-to-U: 20
57808
57820
57831
57832
57837
57865
57942
58090
58102
58285
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCG=>UUG
CCG=>CUG
UCG=>UUG
CCA=>CUA
CAC=>UAC
UCG=>UUG
UCG=>UUG
CCG=>CUG
CAC=>UAC
UCA=>UUA
UCG=>UUG
CCG=>UCG
UCA=>UUA
CCG=>CUG
CGC=>UGC
CCG=>UCG
UCG=>UUG
CCG=>CUG
CGC=>UGC
CCA=>CUA
S=>L
P=>L
S=>L
P=>L
H=>Y
S=>L
S=>L
P=>L
H=>Y
S=>L
S=>L
P=>S
S=>L
P=>L
R=>C
P=>S
S=>L
P=>L
R=>C
P=>L
Asclepias syriacaMitochondrion2
NA: 2
90902-91432CDS
CDS
+NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Beta macrocarpaMitochondrion5
C-to-U: 5
370491
370840
370945
370950
370962
CDS
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCG=>UCG
CAC=>UAC
CCG=>CUG
CCG=>CUG
CCG=>CUG
P=>S
H=>Y
P=>L
P=>L
P=>L
Beta vulgaris subsp. maritimaMitochondrion5
C-to-U: 5
111727
112076
112181
112186
112198
CDS
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCG=>UCG
CCG=>CUG
CCG=>CUG
CCG=>CUG
CAC=>UAC
P=>S
P=>L
P=>L
P=>L
H=>Y
Beta vulgaris subsp. vulgarisMitochondrion4
C-to-U: 4
182144
182249
182254
182266
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
CCG=>CUG
CCG=>CUG
CAC=>UAC
CCG=>UCG
P=>L
P=>L
H=>Y
P=>S
Brassica napusMitochondrion18
C-to-U: 18
202565
202577
202589
202594
202622
202699
202847
202859
203042
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CGC=>UGC
UCA=>UUA
UCG=>UUG
UCG=>UUG
UCG=>UUG
CCA=>CUA
CAC=>UAC
UCA=>UUA
CCG=>CUG
UCG=>UUG
UCG=>UUG
CCG=>CUG
CAC=>UAC
CGC=>UGC
CCG=>CUG
UCG=>UUG
CCG=>CUG
CCA=>CUA
R=>C
S=>L
S=>L
S=>L
S=>L
P=>L
H=>Y
S=>L
P=>L
S=>L
S=>L
P=>L
H=>Y
R=>C
P=>L
S=>L
P=>L
P=>L
Citrullus lanatusMitochondrion9
C-to-U: 9
274374
274386
274431
274505
274508
274656
274668
274851
274854
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCG=>UUG
UCG=>UYG
UCG=>UYG
CCG=>UCG
CCA=>CUA
CCG=>CYG
UCA=>UYA
CGC=>UGC
CCG=>CUG
S=>L
S=>S/L
S=>S/L
P=>S
P=>L
P=>P/L
S=>S/L
R=>C
P=>L
Cucurbita pepoMitochondrion8
C-to-U: 8
83122
83134
83179
83253
83256
83404
83599
83602
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCG=>UCG
UCG=>UUG
CCA=>CUA
CGC=>UGC
GCG=>GYG
UCA=>UUA
CCG=>CUG
CCG=>CUG
P=>S
S=>L
P=>L
R=>C
A=>A/V
S=>L
P=>L
P=>L
Lotus japonicusMitochondrion32
C-to-U: 32
276348
276351
276546
276694
276771
276799
276816
276828
77154
77157
77352
77500
77577
77605
77622
77634
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CGC=>UGC
CCG=>CUG
CGC=>UGC
CCG=>CUG
UCA=>UUA
UCA=>UUA
UCA=>UUA
UCA=>UUA
CGC=>UGC
CCA=>CUA
CGC=>UGC
CCA=>CUA
CAC=>UAC
CCG=>CUG
CAC=>UAC
CCG=>CUG
CCG=>CUG
CAC=>UAC
CCG=>CUG
CAC=>UAC
UCG=>UUG
UCG=>UUG
UCG=>UUG
UCG=>UUG
UCG=>UUG
CCG=>CUG
UCG=>UUG
CCG=>CUG
UCG=>UUG
CCA=>CUA
UCG=>UUG
CCA=>CUA
R=>C
P=>L
R=>C
P=>L
S=>L
S=>L
S=>L
S=>L
R=>C
P=>L
R=>C
P=>L
H=>Y
P=>L
H=>Y
P=>L
P=>L
H=>Y
P=>L
H=>Y
S=>L
S=>L
S=>L
S=>L
S=>L
P=>L
S=>L
P=>L
S=>L
P=>L
S=>L
P=>L
Millettia pinnataMitochondrion16
C-to-U: 16
378009
378021
378038
378066
378146
378294
378489
378492
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCA=>CUA
CCA=>CUA
CCG=>CUG
CCG=>CUG
CCG=>CUG
CCG=>CUG
CAC=>UAC
CAC=>UAC
UCG=>UUG
UCG=>UUG
UCA=>UUA
UCA=>UUA
CGC=>UGC
CGC=>UGC
UCG=>UUG
UCG=>UUG
P=>L
P=>L
P=>L
P=>L
P=>L
P=>L
H=>Y
H=>Y
S=>L
S=>L
S=>L
S=>L
R=>C
R=>C
S=>L
S=>L
Nelumbo nuciferaMitochondrion12
C-to-U: 12
511812
511840
511852
511864
511869
511897
511971
511974
512125
512137
512320
512323
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCG=>UUG
CCG=>CUG
CGC=>UGC
UCA=>UUA
UCG=>UUG
UCG=>UUG
CCA=>UCA
CCA=>CUA
CCG=>CUG
CAC=>UAC
CCG=>CUG
CCG=>UCG
S=>L
P=>L
R=>C
S=>L
S=>L
S=>L
P=>S
P=>L
P=>L
H=>Y
P=>L
P=>S
Ophioglossum californicumMitochondrion18
C-to-U: 16
U-to-C: 2
187749
187812
187991
188188
188196
188311
188345
188348
188383
CDS
CDS
CDS
3'UTR
CDS
CDS
CDS
CDS
3'UTR
3'UTR
5'UTR
CDS
CDS
CDS
CDS
3'UTR
5'UTR
CDS
NAC-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
U-to-C
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
U-to-C
C-to-U
C-to-U
C-to-U
C-to-U
CUU=>UUU
CCU=>CUU
UCC=>UCU
NA=>NA
CAC=>CAU
UAC=>UAU
CCU=>CUU
UAG=>CAG
NA=>NA
NA=>NA
NA=>NA
UAC=>UAU
CUU=>UUU
UAG=>CAG
UCC=>UCU
NA=>NA
NA=>NA
CAC=>CAU
L=>F
P=>L
S=>S
NA=>NA
H=>H
Y=>Y
P=>L
TERM=>Q
NA=>NA
NA=>NA
NA=>NA
Y=>Y
L=>F
TERM=>Q
S=>S
NA=>NA
NA=>NA
H=>H
Oryza sativa Japonica GroupMitochondrion1
C-to-U: 1
343402CDS-C-to-UCAC=>UACH=>Y
Psilotum nudumMitochondrion18
C-to-U: 17
U-to-C: 1
127758
127825
127847
127853
127918
127944
127962
128021
128082
128138
128185
128382
128415
128513
128518
128617
128618
128704
3'UTR
CDS
CDS
5'UTR
3'UTR
CDS
CDS
5'UTR
3'UTR
CDS
5'UTR
3'UTR
CDS
CDS
5'UTR
3'UTR
CDS
5'UTR
NAC-to-U
U-to-C
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
NA=>NA
UGA=>CGA
UUC=>UUU
NA=>NA
NA=>NA
CCU=>CUU
CUC=>CUU
NA=>NA
NA=>NA
CCA=>CUA
NA=>NA
NA=>NA
UCG=>UUG
UCG=>UUG
NA=>NA
NA=>NA
UCA=>UUA
NA=>NA
NA=>NA
TERM=>R
F=>F
NA=>NA
NA=>NA
P=>L
L=>L
NA=>NA
NA=>NA
P=>L
NA=>NA
NA=>NA
S=>L
S=>L
NA=>NA
NA=>NA
S=>L
NA=>NA
Rhazya strictaMitochondrion16
C-to-U: 16
490692
490704
490721
490749
490818
490820
491166
491169
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CAC=>UAC
CAC=>UAC
CCG=>CUG
CCG=>CUG
CCG=>CUG
CCG=>CUG
CCG=>CUG
CCG=>CUG
CCA=>CUA
CCA=>CUA
UCG=>UUG
UCG=>UUG
UCA=>UUA
UCA=>UUA
CGC=>UGC
CGC=>UGC
H=>Y
H=>Y
P=>L
P=>L
P=>L
P=>L
P=>L
P=>L
P=>L
P=>L
S=>L
S=>L
S=>L
S=>L
R=>C
R=>C
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)