rpl23 - Plant Editosome Database - BIG Data Center

Summary

Gene: rpl23
Function: Ribosomal protein
Species: 50
Editing Factors:15 (DYW2, HEMC, MEF37, MORF2, MORF9, NUWA, ORRM1, ORRM1,ORRM6, ORRM6, OTP80, OTP90, OZ1, PGN, PPO1, YL)
Editing Types:
C-to-U (58)
U-to-C (1)
Editing Events: 105 (C-to-U: 58   NA: 46   U-to-C: 1)
External Link: NCBI Gene
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid
Adiantum capillus-venerisChloroplast1
NA: 1
81626-81907CDS-NANA=>NANA=>NA
Alsophila spinulosaChloroplast1
NA: 1
85669-85950CDS-NANA=>NANA=>NA
Ampelopteris proliferaChloroplast1
NA: 1
82160-82429CDS-NANA=>NANA=>NA
Anthoceros angustusChloroplast3
C-to-U: 1
NA: 1
U-to-C: 1
104799-105074
104947
105014
NA
CDS
NA
+
-
U-to-C
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Apopellia endiviifoliaChloroplast2
C-to-U: 2
82119
82244
CDS
CDS
-C-to-U
C-to-U
CUU=>UUU
ACG=>AUG
L=>F
T=>M
Arabidopsis thalianaChloroplast2
C-to-U: 2
152313CDS
CDS
+C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
S=>L
S=>L
Asplenium pekinenseChloroplast2
C-to-U: 1
NA: 1
80847-81119
81118
NA
CDS
+
-
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Asplenium prolongatumChloroplast1
NA: 1
80990-81262CDS-NANA=>NANA=>NA
Athyrium anisopterumChloroplast2
C-to-U: 1
NA: 1
81923-82195
82194
CDS
NA
-
+
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium opacumChloroplast2
C-to-U: 1
NA: 1
81760-82032
82031
CDS
NA
-
+
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium sheareriChloroplast2
C-to-U: 1
NA: 1
81923-82195
82194
NA
CDS
+
-
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium sinenseChloroplast2
C-to-U: 1
NA: 1
81868-82140
82139
CDS
NA
-
+
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Austroblechnum melanocaulonChloroplast2
C-to-U: 1
NA: 1
81992-82261
82260
CDS
NA
-
+
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Christella appendiculataChloroplast2
C-to-U: 1
NA: 1
82016-82285
82284
NA
CDS
+
-
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Cocos nuciferaChloroplast4
C-to-U: 4
152168
152186
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
UCU=>UUU
UCA=>UUA
UCA=>UUA
UCU=>UUU
S=>F
S=>L
S=>L
S=>F
Cystopteris chinensisChloroplast2
C-to-U: 1
NA: 1
82047-82319
82318
NA
CDS
+
-
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deparia lanceaChloroplast2
C-to-U: 1
NA: 1
81678-81947
81946
CDS
NA
-
+
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deparia pycnosoraChloroplast2
C-to-U: 1
NA: 1
81984-82253
82252
CDS
NA
-
+
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deparia viridifronsChloroplast1
NA: 1
81971-82240CDS-NANA=>NANA=>NA
Diplaziopsis cavalerianaChloroplast2
C-to-U: 1
NA: 1
82375-82644
82643
CDS
NA
-
+
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplaziopsis javanicaChloroplast2
C-to-U: 1
NA: 1
82628-82897
82896
CDS
NA
-
+
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium bellumChloroplast2
C-to-U: 1
NA: 1
81903-82175
82174
NA
CDS
+
-
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium dilatatumChloroplast2
C-to-U: 1
NA: 1
81826-82098
82097
NA
CDS
+
-
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium dushanenseChloroplast2
C-to-U: 1
NA: 1
81832-82104
82103
NA
CDS
+
-
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium striatumChloroplast2
C-to-U: 1
NA: 1
81401-81673
81672
CDS
NA
-
+
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium unilobumChloroplast2
C-to-U: 1
NA: 1
81852-82124
82123
NA
CDS
+
-
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplopterygium glaucumChloroplast1
NA: 1
99283-99555NA-NANA=>NANA=>NA
Dryopteris decipiensChloroplast1
NA: 1
81918-82184CDS-NANA=>NANA=>NA
Elaeis guineensisChloroplast2
C-to-U: 2
87538
87556
CDS
CDS
NAC-to-U
C-to-U
UCU=>UUU
UCA=>UUA
S=>F
S=>L
Hevea brasiliensisChloroplast1
C-to-U: 1
159029CDS+C-to-UUCA=>UUAS=>L
Homalosorus pycnocarposChloroplast1
NA: 1
82618-82887CDS-NANA=>NANA=>NA
Hymenasplenium unilateraleChloroplast2
C-to-U: 1
NA: 1
82779-83051
83050
CDS
NA
-
+
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Hypodematium crenatumChloroplast2
C-to-U: 1
NA: 1
81529-81795
81794
CDS
NA
-
+
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Lepisorus clathratusChloroplast2
C-to-U: 1
NA: 1
80517-80783
80782
CDS
NA
-
+
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Lygodium japonicumChloroplast1
NA: 1
84848-85120CDS-NANA=>NANA=>NA
Macrothelypteris torresianaChloroplast2
C-to-U: 1
NA: 1
81829-82101
82100
CDS
NA
-
+
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Matteuccia struthiopterisChloroplast2
C-to-U: 1
NA: 1
81369-81641
81640
CDS
NA
-
+
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Millettia pinnataChloroplast4
C-to-U: 4
151177
85193
CDS
CDS
CDS
CDS
+
-
C-to-U
C-to-U
C-to-U
C-to-U
UCU=>UUU
UCU=>UUU
UCU=>UUU
UCU=>UUU
S=>F
S=>F
S=>F
S=>F
Myriopteris lindheimeriChloroplast2
C-to-U: 1
NA: 1
82456-82737
82736
CDS
NA
-
+
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Nothoceros aenigmaticusPlastid2
NA: 2
106569-106844NA
NA
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Onoclea sensibilisChloroplast2
C-to-U: 1
NA: 1
81002-81274
81273
NA
CDS
+
-
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Phalaenopsis equestrisChloroplast1
C-to-U: 1
146181CDS+C-to-UUCU=>UUUS=>F
Pseudophegopteris auritaChloroplast2
C-to-U: 1
NA: 1
81474-81746
81745
CDS
NA
-
+
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Pteridium aquilinum subsp. aquilinumChloroplast2
C-to-U: 1
NA: 1
83779-84054
84053
CDS
NA
-
+
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Ptilidium pulcherrimumChloroplast1
NA: 1
80536-80811NA-NANA=>NANA=>NA
Rhachidosorus consimilisChloroplast2
C-to-U: 1
NA: 1
82717-82986
82985
CDS
NA
-
+
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Stegnogramma sagittifoliaChloroplast2
C-to-U: 1
NA: 1
81614-81883
81882
NA
CDS
+
-
C-to-U
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Woodsia macrochlaenaChloroplast2
C-to-U: 1
NA: 1
81878-82147
82146
CDS
NA
-
+
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Woodsia polystichoidesChloroplast2
C-to-U: 1
NA: 1
81559-81828
81827
CDS
NA
-
+
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Woodwardia unigemmataChloroplast2
C-to-U: 1
NA: 1
81824-82093
82092
CDS
NA
-
+
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)