DEK36 - Plant Editosome Database - BIG Data Center

Summary

Editing Factor: DEK36
Synonym: Defective Kernel36
Description: Encodes an E+ subgroup PPR protein required for multiple mitochondrial transcripts editing and seed development.
Protein Family: PPR
Subclass: E+
Construct Structure: PLS-E1-E2-E+
Gene ID & Species: AT4G21300 (Arabidopsis thaliana)
GRMZM5G892151 (Zea mays subsp. mays)
Edited Gene(s): atp4    nad7    ccmFN    nad3    ccmFN1    ccmFN2    rps12
Editing Type(s): C-to-U (81)
Publication(s): [1] E+ subgroup PPR protein defective kernel 36 is required for multiple mitochondrial transcripts editing and seed development in maize and Arabidopsis, New Phytologist, 2017. [PMID=28277611]

Editing Details

Species Gene ID Organelle Edited Gene Position Region Editing Type Codon Amino Acid Molecular Effect Experiment Details
Arabidopsis thaliana AT4G21300 Mitochondrion atp4 89 CDS C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
WiscDsLox289_292I10.0At_dek36Ds insertionDs is inserted in 115bpKnockoutCauses arrested embryo and endosperm development, leading to embryo lethalitySeed12 DAPDirect Sequencing of PCR ProductsNAHighDecreased28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentSeed12 DAPDirect Sequencing of PCR ProductsNAHighNone28277611
Arabidopsis thaliana AT4G21300 Mitochondrion atp4 138 CDS C-to-U AUC=>AUU I=>I Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
WiscDsLox289_292I10.0At_dek36Ds insertionDs is inserted in 115bpKnockoutCauses arrested embryo and endosperm development, leading to embryo lethalitySeed12 DAPDirect Sequencing of PCR ProductsNAHighDecreased28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentSeed12 DAPDirect Sequencing of PCR ProductsNAHighNone28277611
Arabidopsis thaliana AT4G21300 Mitochondrion atp4 250 CDS C-to-U CCG/CCG=>UCG/UUG P=>S/L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
WiscDsLox289_292I10.0At_dek36Ds insertionDs is inserted in 115bpKnockoutCauses arrested embryo and endosperm development, leading to embryo lethalitySeed12 DAPDirect Sequencing of PCR ProductsNAMediumDecreased28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentSeed12 DAPDirect Sequencing of PCR ProductsNAHighNone28277611
Arabidopsis thaliana AT4G21300 Mitochondrion ccmFN1 104 CDS C-to-U CCU=>CUU P=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
WiscDsLox289_292I10.0At_dek36Ds insertionDs is inserted in 115bpKnockoutCauses arrested embryo and endosperm development, leading to embryo lethalitySeed12 DAPDirect Sequencing of PCR ProductsNALowDecreased28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentSeed12 DAPDirect Sequencing of PCR ProductsNAMediumNone28277611
Arabidopsis thaliana AT4G21300 Mitochondrion ccmFN1 143 CDS C-to-U UCG=>UUG S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
WiscDsLox289_292I10.0At_dek36Ds insertionDs is inserted in 115bpKnockoutCauses arrested embryo and endosperm development, leading to embryo lethalitySeed12 DAPDirect Sequencing of PCR ProductsNALowDecreased28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentSeed12 DAPDirect Sequencing of PCR ProductsNAHighNone28277611
Arabidopsis thaliana AT4G21300 Mitochondrion ccmFN1 157 CDS C-to-U CCU=>UCU P=>S Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
WiscDsLox289_292I10.0At_dek36Ds insertionDs is inserted in 115bpKnockoutCauses arrested embryo and endosperm development, leading to embryo lethalitySeed12 DAPDirect Sequencing of PCR ProductsNALowDecreased28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentSeed12 DAPDirect Sequencing of PCR ProductsNAMediumNone28277611
Arabidopsis thaliana AT4G21300 Mitochondrion ccmFN1 262 CDS C-to-U CGG=>UGG R=>W Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
WiscDsLox289_292I10.0At_dek36Ds insertionDs is inserted in 115bpKnockoutCauses arrested embryo and endosperm development, leading to embryo lethalitySeed12 DAPDirect Sequencing of PCR ProductsNALowDecreased28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentSeed12 DAPDirect Sequencing of PCR ProductsNAHighNone28277611
Arabidopsis thaliana AT4G21300 Mitochondrion ccmFN1 269 CDS C-to-U CCA=>CUA P=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
WiscDsLox289_292I10.0At_dek36Ds insertionDs is inserted in 115bpKnockoutCauses arrested embryo and endosperm development, leading to embryo lethalitySeed12 DAPDirect Sequencing of PCR ProductsNAMediumDecreased28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentSeed12 DAPDirect Sequencing of PCR ProductsNAHighNone28277611
Arabidopsis thaliana AT4G21300 Mitochondrion ccmFN1 289 CDS C-to-U CUU=>UUU L=>F Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
WiscDsLox289_292I10.0At_dek36Ds insertionDs is inserted in 115bpKnockoutCauses arrested embryo and endosperm development, leading to embryo lethalitySeed12 DAPDirect Sequencing of PCR ProductsNALowDecreased28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentSeed12 DAPDirect Sequencing of PCR ProductsNAMediumNone28277611
Arabidopsis thaliana AT4G21300 Mitochondrion ccmFN1 710 CDS C-to-U CCU/CCU=>CUU/UUU P=>L/F Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
WiscDsLox289_292I10.0At_dek36Ds insertionDs is inserted in 115bpKnockoutCauses arrested embryo and endosperm development, leading to embryo lethalitySeed12 DAPDirect Sequencing of PCR ProductsNALowDecreased28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentSeed12 DAPDirect Sequencing of PCR ProductsNAHighNone28277611
Arabidopsis thaliana AT4G21300 Mitochondrion ccmFN1 779 CDS C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
WiscDsLox289_292I10.0At_dek36Ds insertionDs is inserted in 115bpKnockoutCauses arrested embryo and endosperm development, leading to embryo lethalitySeed12 DAPDirect Sequencing of PCR ProductsNALowDecreased28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentSeed12 DAPDirect Sequencing of PCR ProductsNAHighNone28277611
Arabidopsis thaliana AT4G21300 Mitochondrion ccmFN1 806 CDS C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
WiscDsLox289_292I10.0At_dek36Ds insertionDs is inserted in 115bpKnockoutCauses arrested embryo and endosperm development, leading to embryo lethalitySeed12 DAPDirect Sequencing of PCR ProductsNALowDecreased28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentSeed12 DAPDirect Sequencing of PCR ProductsNAHighNone28277611
Arabidopsis thaliana AT4G21300 Mitochondrion ccmFN1 955 CDS C-to-U CGC=>UGC R=>C Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
WiscDsLox289_292I10.0At_dek36Ds insertionDs is inserted in 115bpKnockoutCauses arrested embryo and endosperm development, leading to embryo lethalitySeed12 DAPDirect Sequencing of PCR ProductsNAPoorDecreased28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentSeed12 DAPDirect Sequencing of PCR ProductsNALowNone28277611
Arabidopsis thaliana AT4G21300 Mitochondrion ccmFN2 65 CDS C-to-U UCG=>UUG S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
WiscDsLox289_292I10.0At_dek36Ds insertionDs is inserted in 115bpKnockoutCauses arrested embryo and endosperm development, leading to embryo lethalitySeed12 DAPDirect Sequencing of PCR ProductsNAMediumDecreased28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentSeed12 DAPDirect Sequencing of PCR ProductsNAHighNone28277611
Arabidopsis thaliana AT4G21300 Mitochondrion ccmFN2 176 CDS C-to-U CCA=>CUA P=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
WiscDsLox289_292I10.0At_dek36Ds insertionDs is inserted in 115bpKnockoutCauses arrested embryo and endosperm development, leading to embryo lethalitySeed12 DAPDirect Sequencing of PCR ProductsNAMediumDecreased28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentSeed12 DAPDirect Sequencing of PCR ProductsNAHighNone28277611
Arabidopsis thaliana AT4G21300 Mitochondrion ccmFN2 208 CDS C-to-U CGG=>UGG R=>W Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
WiscDsLox289_292I10.0At_dek36Ds insertionDs is inserted in 115bpKnockoutCauses arrested embryo and endosperm development, leading to embryo lethalitySeed12 DAPDirect Sequencing of PCR ProductsNAMediumDecreased28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentSeed12 DAPDirect Sequencing of PCR ProductsNAHighNone28277611
Arabidopsis thaliana AT4G21300 Mitochondrion ccmFN2 226 CDS C-to-U CGG=>UGG R=>W Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
WiscDsLox289_292I10.0At_dek36Ds insertionDs is inserted in 115bpKnockoutCauses arrested embryo and endosperm development, leading to embryo lethalitySeed12 DAPDirect Sequencing of PCR ProductsNAMediumDecreased28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentSeed12 DAPDirect Sequencing of PCR ProductsNAHighNone28277611
Arabidopsis thaliana AT4G21300 Mitochondrion ccmFN2 259 CDS C-to-U CGG=>UGG R=>W Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
WiscDsLox289_292I10.0At_dek36Ds insertionDs is inserted in 115bpKnockoutCauses arrested embryo and endosperm development, leading to embryo lethalitySeed12 DAPDirect Sequencing of PCR ProductsNAMediumDecreased28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentSeed12 DAPDirect Sequencing of PCR ProductsNAHighNone28277611
Arabidopsis thaliana AT4G21300 Mitochondrion ccmFN2 277 CDS C-to-U CGU=>UGU R=>C Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
WiscDsLox289_292I10.0At_dek36Ds insertionDs is inserted in 115bpKnockoutCauses arrested embryo and endosperm development, leading to embryo lethalitySeed12 DAPDirect Sequencing of PCR ProductsNAMediumDecreased28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentSeed12 DAPDirect Sequencing of PCR ProductsNAHighNone28277611
Arabidopsis thaliana AT4G21300 Mitochondrion ccmFN2 320 CDS C-to-U UCG=>UUG S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
WiscDsLox289_292I10.0At_dek36Ds insertionDs is inserted in 115bpKnockoutCauses arrested embryo and endosperm development, leading to embryo lethalitySeed12 DAPDirect Sequencing of PCR ProductsNAMediumDecreased28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentSeed12 DAPDirect Sequencing of PCR ProductsNAHighNone28277611
Arabidopsis thaliana AT4G21300 Mitochondrion ccmFN2 344 CDS C-to-U CCA=>CUA P=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
WiscDsLox289_292I10.0At_dek36Ds insertionDs is inserted in 115bpKnockoutCauses arrested embryo and endosperm development, leading to embryo lethalitySeed12 DAPDirect Sequencing of PCR ProductsNAMediumDecreased28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentSeed12 DAPDirect Sequencing of PCR ProductsNAHighNone28277611
Arabidopsis thaliana AT4G21300 Mitochondrion ccmFN2 356 CDS C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
WiscDsLox289_292I10.0At_dek36Ds insertionDs is inserted in 115bpKnockoutCauses arrested embryo and endosperm development, leading to embryo lethalitySeed12 DAPDirect Sequencing of PCR ProductsNAMediumDecreased28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentSeed12 DAPDirect Sequencing of PCR ProductsNAHighNone28277611
Arabidopsis thaliana AT4G21300 Mitochondrion ccmFN2 391 CDS C-to-U CCC=>UCC P=>S Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
WiscDsLox289_292I10.0At_dek36Ds insertionDs is inserted in 115bpKnockoutCauses arrested embryo and endosperm development, leading to embryo lethalitySeed12 DAPDirect Sequencing of PCR ProductsNAMediumDecreased28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentSeed12 DAPDirect Sequencing of PCR ProductsNAHighNone28277611
Arabidopsis thaliana AT4G21300 Mitochondrion nad7 789 CDS C-to-U AUC=>AUU I=>I Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
WiscDsLox289_292I10.0At_dek36Ds insertionDs is inserted in 115bpKnockoutCauses arrested embryo and endosperm development, leading to embryo lethalitySeed12 DAPDirect Sequencing of PCR Products0.00%UneditedAbsent28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentSeed12 DAPDirect Sequencing of PCR ProductsNALowNone28277611
Arabidopsis thaliana AT4G21300 Mitochondrion nad7 795 CDS C-to-U AUC=>AUU I=>I Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
WiscDsLox289_292I10.0At_dek36Ds insertionDs is inserted in 115bpKnockoutCauses arrested embryo and endosperm development, leading to embryo lethalitySeed12 DAPDirect Sequencing of PCR ProductsNALowDecreased28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentSeed12 DAPDirect Sequencing of PCR ProductsNAHighNone28277611
Arabidopsis thaliana AT4G21300 Mitochondrion rps12 104 CDS C-to-U CCG=>CUG P=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
WiscDsLox289_292I10.0At_dek36Ds insertionDs is inserted in 115bpKnockoutCauses arrested embryo and endosperm development, leading to embryo lethalitySeed12 DAPDirect Sequencing of PCR ProductsNAMediumDecreased28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentSeed12 DAPDirect Sequencing of PCR ProductsNAHighNone28277611
Arabidopsis thaliana AT4G21300 Mitochondrion rps12 146 CDS C-to-U CCA=>CUA P=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
WiscDsLox289_292I10.0At_dek36Ds insertionDs is inserted in 115bpKnockoutCauses arrested embryo and endosperm development, leading to embryo lethalitySeed12 DAPDirect Sequencing of PCR ProductsNAMediumDecreased28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentSeed12 DAPDirect Sequencing of PCR ProductsNAHighNone28277611
Arabidopsis thaliana AT4G21300 Mitochondrion rps12 196 CDS C-to-U CAC=>UAC H=>Y Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
WiscDsLox289_292I10.0At_dek36Ds insertionDs is inserted in 115bpKnockoutCauses arrested embryo and endosperm development, leading to embryo lethalitySeed12 DAPDirect Sequencing of PCR ProductsNAMediumDecreased28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentSeed12 DAPDirect Sequencing of PCR ProductsNAHighNone28277611
Arabidopsis thaliana AT4G21300 Mitochondrion rps12 221 CDS C-to-U UCG=>UUG S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
WiscDsLox289_292I10.0At_dek36Ds insertionDs is inserted in 115bpKnockoutCauses arrested embryo and endosperm development, leading to embryo lethalitySeed12 DAPDirect Sequencing of PCR ProductsNAMediumDecreased28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentSeed12 DAPDirect Sequencing of PCR ProductsNAHighNone28277611
Arabidopsis thaliana AT4G21300 Mitochondrion rps12 269 CDS C-to-U UCG=>UUG S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
WiscDsLox289_292I10.0At_dek36Ds insertionDs is inserted in 115bpKnockoutCauses arrested embryo and endosperm development, leading to embryo lethalitySeed12 DAPDirect Sequencing of PCR ProductsNAMediumDecreased28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentSeed12 DAPDirect Sequencing of PCR ProductsNAHighNone28277611
Arabidopsis thaliana AT4G21300 Mitochondrion rps12 284 CDS C-to-U UCC/UCC=>UUC/UUU S=>F/F Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
WiscDsLox289_292I10.0At_dek36Ds insertionDs is inserted in 115bpKnockoutCauses arrested embryo and endosperm development, leading to embryo lethalitySeed12 DAPDirect Sequencing of PCR ProductsNAMediumDecreased28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentSeed12 DAPDirect Sequencing of PCR ProductsNAHighNone28277611
Arabidopsis thaliana AT4G21300 Mitochondrion rps12 285 CDS C-to-U UCC/UCC=>UCU/UUU S=>S/F Synonymous/Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
WiscDsLox289_292I10.0At_dek36Ds insertionDs is inserted in 115bpKnockoutCauses arrested embryo and endosperm development, leading to embryo lethalitySeed12 DAPDirect Sequencing of PCR ProductsNAMediumDecreased28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentSeed12 DAPDirect Sequencing of PCR ProductsNAHighNone28277611
Zea mays subsp. mays GRMZM5G892151 Mitochondrion atp4 59 CDS C-to-U UCU=>UUU S=>F Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
W64A * 3907l(cp*-1434, o*-1434)dek36Introgression of MutationG-to-E mutation in 564bpHomozygousProduces small and collapsed kernels, leading to embryos and/or seedlings lethalityKernelNADirect Sequencing of PCR Products0.00%UneditedDecreased28277611
W64A * 3907l(cp*-1434, o*-1434)dek36Introgression of MutationG-to-E mutation in 564bpHomozygousProduces small and collapsed kernels, leading to embryos and/or seedlings lethalitySeedlingNADirect Sequencing of PCR Products0.00%UneditedDecreased28277611
W22W22No treatmentNo treatmentNo treatmentNo treatmentKernelNADirect Sequencing of PCR Products100.00%CompleteNone28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentKernelNADirect Sequencing of PCR Products100.00%CompleteNone28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentSeedlingNADirect Sequencing of PCR Products100.00%CompleteNone28277611
Zea mays subsp. mays GRMZM5G892151 Mitochondrion ccmFN 302 CDS C-to-U CCA=>CUA P=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
W64A * 3907l(cp*-1434, o*-1434)dek36Introgression of MutationG-to-E mutation in 564bpHomozygousProduces small and collapsed kernels, leading to embryos and/or seedlings lethalityKernelNADirect Sequencing of PCR ProductsNAMediumDecreased28277611
W64A * 3907l(cp*-1434, o*-1434)dek36Introgression of MutationG-to-E mutation in 564bpHomozygousProduces small and collapsed kernels, leading to embryos and/or seedlings lethalitySeedlingNADirect Sequencing of PCR ProductsNAMediumDecreased28277611
W22W22No treatmentNo treatmentNo treatmentNo treatmentKernelNADirect Sequencing of PCR ProductsNAHighNone28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentKernelNADirect Sequencing of PCR ProductsNAHighNone28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentSeedlingNADirect Sequencing of PCR ProductsNAHighNone28277611
Zea mays subsp. mays GRMZM5G892151 Mitochondrion nad3 230 CDS C-to-U UCU=>UUU S=>F Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
W64A * 3907l(cp*-1434, o*-1434)dek36Introgression of MutationG-to-E mutation in 564bpHomozygousProduces small and collapsed kernels, leading to embryos and/or seedlings lethalityKernelNADirect Sequencing of PCR Products100.00%CompleteSimilar28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentKernelNADirect Sequencing of PCR Products50.00%MediumNone28277611
Zea mays subsp. mays GRMZM5G892151 Mitochondrion nad7 383 CDS C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
W64A * 3907l(cp*-1434, o*-1434)dek36Introgression of MutationG-to-E mutation in 564bpHomozygousProduces small and collapsed kernels, leading to embryos and/or seedlings lethalityKernelNADirect Sequencing of PCR ProductsNALowDecreased28277611
W64A * 3907l(cp*-1434, o*-1434)dek36Introgression of MutationG-to-E mutation in 564bpHomozygousProduces small and collapsed kernels, leading to embryos and/or seedlings lethalitySeedlingNADirect Sequencing of PCR ProductsNALowDecreased28277611
W22W22No treatmentNo treatmentNo treatmentNo treatmentKernelNADirect Sequencing of PCR Products100.00%CompleteNone28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentKernelNADirect Sequencing of PCR Products100.00%CompleteNone28277611
ColWTNo treatmentNo treatmentNo treatmentNo treatmentSeedlingNADirect Sequencing of PCR Products100.00%CompleteNone28277611
Last update: Jul 2021 (version 1.0)