Methylome Browser

Soybean (Glycine max)


Genomic overview map of methylation

The outermost circle displays chromosomes, whereas other circles from the outer to the inner represent distributions of CG methylation level, CHG methylation level, CHH methylation level, Watson strand genes, methylation level in Watson strand genes, methylation level in Crick strand genes, Crick strand genes, CpG Islands, and methylation level in CpG Islands. It should be noted that the innermost indicates largest count for Crick strand genes.

The fraction of methylcytosines identified in each sequence context, where H = A, C, or T.

Distribution of the methylcytosine percentage in each sequences context.

Methylation levels in promoters or gene bodies of different samples

Methylation levels in promoters or gene bodies of different tissues

Project List

Project ID Project Name Platform Submitter Year Experiment No.
SRP010037 Methylation Changes During Soybean Seed Development Illumina HiSeq 2000 Goldberg RB, Le BH 2011 15
SRP010103 Glycine max Epigenomics Illumina Genome Analyzer IIx Zhang JS 2012 4
SRP012990 Methylation Changes in Soybean Early Maturation Seed Compartments Using LCM Illumina HiSeq 2000 Goldberg RB, Hur J 2012 2
SRP012991 Methylation changes in soybean early maturation seed parts Illumina HiSeq 2000 Goldberg RB, Le BH 2012 3
SRP015838 Methylation changes in soybean mid-maturation seed parts Illumina HiSeq 2000 Goldberg RB, Le BH 2012 3
SRP016593 Single-base resolution DNA methylomes of soybean recombinant inbred lines reveals heritability patterns of natural methylation variants Illumina HiSeq 2000 Schmitz RJ,Ecker JR 2012 2
SRP042052 Methylation Changes in Soybean Cotyledon Stage Seed Parts Illumina HiSeq 2000 Goldberg RB, Le BH 2014 3
SRP049211 Single-base resolution DNA methylomes of two legume species, Glycine max (soybean) and Phaseolus vulgaris (common bean) Illumina HiSeq 2000 University of Georgia 2015 8