Methylome Browser

Rice (Oryza sativa)


Genomic overview map of methylation

The outermost circle displays chromosomes, whereas other circles from the outer to the inner represent distributions of CG methylation level, CHG methylation level, CHH methylation level, Watson strand genes, methylation level in Watson strand genes, methylation level in Crick strand genes, Crick strand genes, CpG Islands, and methylation level in CpG Islands. It should be noted that the innermost indicates largest count for Crick strand genes.

The fraction of methylcytosines identified in each sequence context, where H = A, C, or T.

Distribution of the methylcytosine percentage in each sequences context.

Methylation levels in promoters or gene bodies of different samples

Methylation levels in promoters or gene bodies of different tissues

Project List

Project ID Project Name Platform Submitter Year Experiment No.
PRJCA000239 Methylation changes during rice seed development Illumina Genome Analyzer II Li R 2016 6
SRP013556 Transcriptome and methylome interactions in rice hybrids Illumina Genome Analyzer II Chodavarapu RK, Pellegrini M 2012 1
SRP017256 Plants regenerated from tissue culture contain stable epigenome changes in rice Illumina HiSeq 2000 Stroud H, Jacobsen SE 2012 18
SRP032765 DNA methylation in rice in response to phosphate stress Illumina HiSeq 1000 Secco D, Lister R 2013 64
SRP043447 Oryza sativa Raw sequence reads/methylome of homozygote,heterozygote and WT Illumina HiSeq 2000 Hu L, Liu B 2014 3
SRP061969 Cooperation between H3K27me3 and non-CG methylation in epigenetic regulation of genes in rice. Illumina HiSeq 2000 Zhou SL 2016 1