Browse - MethBank

Tomato (Solanum lycopersicum)


Methylome Browser

The outermost circle displays chromosomes, whereas other circles from the outer to the inner represent distributions of CG methylation level, CHG methylation level, CHH methylation level, Watson strand genes, methylation level in Watson strand genes, methylation level in Crick strand genes, Crick strand genes, CpG islands, and methylation level in CpG Islands. It should be noted that the innermost indicates largest count for Crick strand genes.

The fraction of methylcytosines identified in each sequence context, where H = A, C, or T.

Distribution of the methylcytosine percentage in each sequences context.

Methylation levels in promoters or gene bodies of different samples

Methylation levels in promoters or gene bodies of different tissues

Project List

Project ID Project Name Platform Submitter Year Experiment No.
SRP008329 whole genome shotgun bisulfite sequencing of tomato fruits Illumina HiSeq 2000/Illumina Genome Analyzer II Zhong S, Giovannoni JJ 2011 8
SRP082267 Tomato methylomes during chilling Illumina HiSeq 2500 Boyce Thompson Institute 2016 3