Scientific Name
Takifugu bimaculatus
Common Names
Tetrodon bimaculatus
Bioproject
PRJCA001426
Biosample
SAMC070421
Accession No.
GWHAATF00000000
GWH reannotation accession
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GSA raw reads
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GVM variations of the species
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Submitter Organization
College of Ocean and Earth Sciences, Xiamen University
Contact
Peng Xu, xupeng77@xmu.edu.cn
Sequence author(s)
Peng Xu, Zhixiong Zhou, Bo Liu, Baohua Chen, Yue Shi, Fei Pu, Leibin Li
Released Date
2019-05-19
Assembly Level
Draft genome in chromosome level
Genome Representation
Full Genome
Assembly method
Falcon 1.8.2
Sequencing & coverage
PacBio 73.69
Hi-C 117.8
Illumina HiSeq 2500 135.52
RNA-seq with Illumina Hiseq 2500 54.3
Download
DNA GFF RNA Protein
Publication(s)
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Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHAATF00000000 - TBFGL_pacHiC_1.0 Draft genome in chromosome level 2019-05-19 DNA GFF RNA Protein
GWHAATF00000000.1 - v2.0 Draft genome in chromosome level 2022-05-08 DNA GFF RNA Protein

Statistics of Genome Assembly

Genome size (bp) 404,311,738
GC content 45.56%
Chromosomes sequence No. 22
Genome sequence No. 1,158
Maximum genome sequence length (bp) 28,865,866
Minimum genome sequence length (bp) 233
Average genome sequence length (bp) 349,147
Genome sequence N50 (bp) 16,785,490
Genome sequence N90 (bp) 10,376,233
Annotation of Whole Genome Assembly
Protein Others Total
Chromosome 20,140 2 20,142
Total 20,140 2 20,142
Annotation Details
ChrID Protein Others Total
chr1 1,547 0 1,547
chr10 1,011 0 1,011
chr11 884 0 884
chr12 980 0 980
chr13 806 0 806
chr14 725 0 725
chr15 957 0 957
chr16 953 0 953
chr17 552 0 552
chr18 870 0 870
chr19 806 0 806
chr2 1,055 0 1,055
chr20 782 0 782
chr21 827 1 828
chr22 541 0 541
chr3 908 0 908
chr4 1,037 0 1,037
chr5 983 1 984
chr6 983 0 983
chr7 1,026 0 1,026
chr8 1,015 0 1,015
chr9 892 0 892
Total 20,140 2 20,142