- Scientific Name
- Cyprinus carpio haematopterus
- Common Names
- Huanghe carp; Amur carp;
- Bioproject
- PRJCA001408
- Biosample
- SAMC068936
- Accession No.
- GWHAATB00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- COLLEGE OF OCEAN & EARTH SCIENCES, Xiamen University
- Contact
- Peng Xu, xupeng77@xmu.edu.cn
- Sequence author(s)
- Peng Xu
- Released Date
- 2019-05-09
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- SOAPdenovo 2017-08-05
- Sequencing & coverage
- Illumina HiSeq 430.5
- Download
-
DNA
GFF
RNA
Protein
- Publication(s)
- Peng Xu, et al. The allotetraploid origin and asymmetrical genome evolution of the common carp Cyprinus carpio. Nature Communications. 2019, 10(1):4625.
Statistics of Genome Assembly
| Genome size (bp) | 1,424,950,904 |
| GC content | 36.93% |
| Genome sequence No. | 143,167 |
| Maximum genome sequence length (bp) | 37,007,192 |
| Minimum genome sequence length (bp) | 200 |
| Average genome sequence length (bp) | 9,953 |
| Genome sequence N50 (bp) | 24,711,792 |
| Genome sequence N90 (bp) | 126,729 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 44,626 | 44,626 |