Scientific Name
Simmondsia chinensis
Common Names
goatnut, jojoba; Simmondsia californica
Bioproject
PRJCA001382
Biosample
SAMC067980
Accession No.
GWHAASQ00000000
GWH reannotation accession
-
GSA raw reads
-
GVM variations of the species
-
Submitter Organization
-, National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University
Contact
Liang Guo, guoliang@mail.hzau.edu.cn
Sequence author(s)
Liang Guo
Released Date
2019-04-22
Assembly Level
Draft genome in chromosome level
Genome Representation
Full Genome
Assembly method
FALCON v0.3.0
Sequencing & coverage
PacBio 120.0
Download
DNA GFF RNA Protein
Publication(s)
Drew Sturtevant, et al. The genome of jojoba (Simmondsia chinensis): A taxonomically isolated species that directs wax ester accumulation in its seeds. Science Advances. 2020, 6(11): eaay3240.
Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHAASQ00000000 - sc1 Draft genome in chromosome level 2019-04-22 DNA GFF RNA Protein

Statistics of Genome Assembly

Genome size (bp) 886,727,160
GC content 37.28%
Chromosomes sequence No. 26
Genome sequence No. 27
Maximum genome sequence length (bp) 53,923,705
Minimum genome sequence length (bp) 2,051,652
Average genome sequence length (bp) 32,841,747
Genome sequence N50 (bp) 38,943,102
Genome sequence N90 (bp) 21,647,737
Annotation of Whole Genome Assembly
Protein Total
Chromosome 39,847 39,847
Others 166 166
Total 40,013 40,013
Annotation Details
ChrID Protein Total
chr1 1,920 1,920
chr10 1,887 1,887
chr11 1,629 1,629
chr12 1,921 1,921
chr13 1,816 1,816
chr14 1,500 1,500
chr15 1,276 1,276
chr16 2,034 2,034
chr17 1,482 1,482
chr18 1,335 1,335
chr19 1,477 1,477
chr2 1,675 1,675
chr20 1,403 1,403
chr21 1,196 1,196
chr22 946 946
chr23 1,192 1,192
chr24 757 757
chr25 990 990
chr26 797 797
chr3 2,065 2,065
chr4 1,835 1,835
chr5 1,685 1,685
chr6 1,861 1,861
chr7 1,756 1,756
chr8 1,523 1,523
chr9 1,889 1,889
Others 166 166
Total 40,013 40,013