- Scientific Name
- Pantoea
- Common Names
- -
- Bioproject
- PRJCA000765
- Biosample
- SAMC021053
- Accession No.
- GWHAABM00000000
- GWH reannotation accession
- GWHRA_AABM00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- -, Beijing Agro-biotechnology Research Center, Beijing Academy of Agriculture and Forestry Sciences
- Contact
- Junlian Gao, gaojunlian@baafs.net.cn
- Sequence author(s)
- Junlian Gao, Jianguang Sun
- Released Date
- 2018-04-02
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Partial Genome ( Nuclear )
- Assembly method
- SPAdes 1.0
- Sequencing & coverage
- Hiseq X 10 200.0
- Download
-
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein - Publication(s)
- Junlian Gao, et al. Pantoea endophytica sp. nov., novel endophytic bacteria isolated from maize planting in different geographic regions of northern China. Systematic and Applied Microbiology. 2019, 42(4):488-494.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHAABM00000000 | GWHRA_AABM00000000.1 | scaffolds.569YD | Draft genome in scaffold level | 2018-04-02 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 5,055,029 |
| GC content | 54.89% |
| Scaffold sequence No. | 48 |
| Maximum scaffold sequence length (bp) | 918,917 |
| Minimum scaffold sequence length (bp) | 272 |
| Average scaffold sequence length (bp) | 105,313 |
| Scaffold N50 (bp) | 499,925 |
| Scaffold N90 (bp) | 91,750 |
Statistics of Genome Assembly
| Genome size (bp) | 5,055,029 |
| GC content | 54.89% |
| Scaffold sequence No. | 48 |
| Maximum scaffold sequence length (bp) | 918,917 |
| Minimum scaffold sequence length (bp) | 272 |
| Average scaffold sequence length (bp) | 105,313 |
| Scaffold N50 (bp) | 499,925 |
| Scaffold N90 (bp) | 91,750 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | ncRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 4,617 | 73 | 13 | 1 | 42 | 69 | 4,815 |