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  • Rosa chinensis var. spontanea
  • Rose
    • Scientific Name
    Rosa chinensis var. spontanea
    Common Names
    -
    Bioproject
    PRJCA000629
    Biosample
    SAMC017397
    Accession No.
    GWHAAAF00000000
    GWH reannotation accession
    -
    GSA raw reads
    CRR022701, CRR022700
    GVM variations of the species
    -
    Submitter Organization
    Ornamental Horticulture and Landscape Achitecture, China Agricultural University
    Contact
    Qinglin Liu, liuql@cau.edu.cn
    Sequence author(s)
    Qinglin Liu, Lingqing Wu
    Released Date
    2018-11-08
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Full Genome
    Assembly method
    Platanus v1.2.1
    Sequencing & coverage
    Illumina HiSeq 2500 290.6
    Download
    DNA GFF RNA Protein
    Publication(s)
    Rui Yu, et al. RcSPL1-RcTAF15b regulates the flowering time of rose (Rosa chinensis). Horticulture Research. 2023, 10(6).
    Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
    GWHAAAF00000000 - Rose Draft genome in chromosome level 2018-11-08 DNA GFF RNA Protein

    Statistics of Genome Assembly

    Genome size (bp) 488,571,124
    GC content 39.32%
    Chromosomes sequence No. 7
    Genome sequence No. 73,882
    Maximum genome sequence length (bp) 71,872,144
    Minimum genome sequence length (bp) 200
    Average genome sequence length (bp) 6,613
    Genome sequence N50 (bp) 45,493,973
    Genome sequence N90 (bp) 2,036
    Annotation of Whole Genome Assembly
    Protein Total
    Chromosome 27,032 27,032
    Others 6,172 6,172
    Total 33,204 33,204
    Annotation Details
    ChrID Protein Total
    chr1 2,121 2,121
    chr2 5,664 5,664
    chr3 3,441 3,441
    chr4 2,959 2,959
    chr5 4,650 4,650
    chr6 4,168 4,168
    chr7 4,029 4,029
    Others 6,172 6,172
    Total 33,204 33,204