Scientific Name
Thaumarchaeota
Common Names
Nitrososphaeraeota, Nitrososphaerota
Bioproject
PRJCA000762
Biosample
SAMC021090
Accession No.
GWHAABC00000000
GWH reannotation accession
GWHRA_AABC00000000.1
GSA raw reads
-
GVM variations of the species
-
Submitter Organization
Science, Institute of Deep-Sea Science and Engineering, Chinese Academy of Sciences
Contact
Yong Wang, wangy@idsse.ac.cn
Sequence author(s)
Yong Wang, Jiaomei Huang
Released Date
2019-01-09
Assembly Level
Draft genome in scaffold level
Genome Representation
Full Genome
Assembly method
SPAdes v.3.6.2
Sequencing & coverage
MiSeq 10.0
Download
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein
Publication(s)
Yong Wang, et al. Genomics insights into ecotype formation of ammonia‐oxidizing archaea in the deep ocean. Environmental Microbiology. 2019, 21(2):716-729.
Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHAABC00000000 GWHRA_AABC00000000.1 Alpha_AOA_ma3 Draft genome in scaffold level 2019-01-09 DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein

Statistics of Genome Assembly

Genome size (bp) 1,134,945
GC content 33.21%
Scaffold sequence No. 46
Maximum scaffold sequence length (bp) 142,773
Minimum scaffold sequence length (bp) 2,656
Average scaffold sequence length (bp) 24,673
Scaffold N50 (bp) 36,472
Scaffold N90 (bp) 13,216

Statistics of Genome Assembly

Genome size (bp) 1,134,945
GC content 33.21%
Scaffold sequence No. 46
Maximum scaffold sequence length (bp) 142,773
Minimum scaffold sequence length (bp) 2,656
Average scaffold sequence length (bp) 24,673
Scaffold N50 (bp) 36,472
Scaffold N90 (bp) 13,216
Annotation of Whole Genome Assembly
Protein tRNA rRNA Pseudogene Others Total
Total 1,413 41 3 7 48 1,512