Scientific Name
Mesorhizobium
Common Names
-
Bioproject
PRJCA001028
Biosample
SAMC045616
Accession No.
GWHAAFA00000000
GWH reannotation accession
GWHRA_AAFA00000000.1
GSA raw reads
-
GVM variations of the species
-
Submitter Organization
-, Beijing Agro-biotechnology Research Center, Beijing Academy of Agriculture and Forestry Sciences
Contact
Junlian Gao, gaojunlian@baafs.net.cn
Sequence author(s)
Junlian Gao
Released Date
2018-10-08
Assembly Level
Draft genome in scaffold level
Genome Representation
Partial Genome
Assembly method
SPAdes 1.0
Sequencing & coverage
Illumina HiSeq 2000 5.0
Download
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein
Publication(s)
-
Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHAAFA00000000 GWHRA_AAFA00000000.1 YM1C-6-2.fna Draft genome in scaffold level 2018-10-08 DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein

Statistics of Genome Assembly

Genome size (bp) 5,512,539
GC content 64.45%
Scaffold sequence No. 54
Maximum scaffold sequence length (bp) 1,027,253
Minimum scaffold sequence length (bp) 209
Average scaffold sequence length (bp) 102,084
Scaffold N50 (bp) 461,261
Scaffold N90 (bp) 86,268

Statistics of Genome Assembly

Genome size (bp) 5,512,539
GC content 64.45%
Scaffold sequence No. 54
Maximum scaffold sequence length (bp) 1,027,253
Minimum scaffold sequence length (bp) 209
Average scaffold sequence length (bp) 102,084
Scaffold N50 (bp) 461,261
Scaffold N90 (bp) 86,268
Annotation of Whole Genome Assembly
Protein tRNA rRNA ncRNA Pseudogene Others Total
Total 5,305 45 3 1 55 69 5,478