Scientific Name
Oryza granulata
Common Names
-
Bioproject
PRJCA000888
Biosample
SAMC042921
Accession No.
GWHAAEL00000000
Submitter Organization
Ministry of Education Key Laboratory of Agriculture Biodiversity for Plant Disease Management, Yunnan Agricultural University
Contacts
Rui Yang yangruikm@qq.com
Released Date
2018-05-26
Assembly Level
Draft genome in contig level
Genome Representation
Full Genome
Reference Genome
yes
Assembly method
Canu 1.0
Sequencing & coverage
Illumina HiSeq 2500 102.0
PacBio single-molecule real-time (SMRT) 21.0
Assembly Files
DNA GFF RNA Protein
Publication(s)
Rui Yang. De novo genome assembly of Oryza granulata reveals rapid genome expansion and adaptive evolution. Communication biology. 2018.

Statistics of Genome Assembly

Genome size (bp) 776,957,456
GC content 46.32%
Contig sequence No. 4,618
Maximum contig sequence length (bp) 1,587,995
Minimum contig sequence length (bp) 2,000
Average contig sequence length (bp) 168,245
Contig N50 (bp) 262,045
Contig N90 (bp) 75,226
Annotation of Whole Genome Assembly
Protein Total
Total 52,499 52,499