Basic Information

SNP ID chx54895212
Organism Capra hircus
Genome Assembly CHIR_2.0
Version 1
Variation Class SNP
Position chr5:88979303
RefSNP Alleles A/G
Synonyms ID  

Gene Annotation

Gene ID Transcript ID Gene Symbol Variant Effect Biotype cDNA Position Allele Change Protein ID Protein Position Residue Change
- intergenic_variant - - - => - - - - => -

Population Diversity

Population Sample # Allele:Frequency Genotype:Frequency

G2P Annotation

Breed/
Population
Sample SizeTissueTrait Trait Ontology Phenotype TypeGenotype TechnologyModelReported LocationEffect AlleleP ValueORR2%Reported GeneEntrez Gene SymbolQTLPMID
Italian Garfagnina goat breed48Serumparatuberculosis resistancediseasebinarythe Illumina GoatSNP60 BeadChipthe qt-score function of the GenABEL packageCHIR_1.0:5_85352445<0.0005 102187133 PCSK5 28526988