Genome Assembly

Position and Type

 
 
 
 

Consequence Type

HIGH             

MODERATE 

LOW             

MODIFIER             

Annotation Gene Information

 
 
 
 
 
 
 
mRNA  rRNA  miRNA
 
 

Minor Allele Frequency

  (0-0.5)

ClinVar Traits

Effect             

     Initial 

OMIM Traits

    Initial         

GWAS-Catalog Traits

Ontology             

Genotype to Phenotype

growth
drought tolerance
metabolite
agronomic traits
resistance
flowering time
forage quality
yield

Pfam

 
 
 

Setting Properties

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All VarID
Position
Alleles
MAF
Consequence Type|Effect
Gene
dbSNP
smil1 scaffold1402:327 A/G G: intergenic_variant|MODIFIER -  
smil2 scaffold1402:1270 G/T T: intergenic_variant|MODIFIER -  
smil3 scaffold1402:1287 C/T T: intergenic_variant|MODIFIER -  
smil4 scaffold1402:1308 G/A A: intergenic_variant|MODIFIER -  
smil5 scaffold1402:1312 C/A A: intergenic_variant|MODIFIER -  
smil6 scaffold1402:1335 C/T C: intergenic_variant|MODIFIER -  
smil7 scaffold1402:1509 C/A A: intergenic_variant|MODIFIER -  
smil8 scaffold1402:1572 C/G G: intergenic_variant|MODIFIER -  
smil9 scaffold1402:1804 C/T T: upstream_gene_variant|MODIFIER SMil_00012983 (SMil_00012983)  
smil10 scaffold1402:1817 G/T T: upstream_gene_variant|MODIFIER SMil_00012983 (SMil_00012983)