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Genome Assembly
Animals-----------
Homo sapiens (human GRCh37)
Bos taurus (cattle UMD_3.1)
Gallus gallus (chicken Gallus_gallus-5.0)
Canis familaries (dog CanFam3.1)
Anas platyrhynchos (duck BGI_duck_1.0)
Ailuropoda melanoleuca (giant panda AilMel1)
Equus caballus (horse EquCab2.0)
Capra hircus (goat CHIR_2.0)
Orcinus orca (killer whale Oorcal.1)
Sus scrofa (pig Sscrofa10.2)
Ovis aries (sheep Oar_v4.0)
Equus ferus (tarpan EquCab2.0)
Plants-----------
Daucus carota (carrot Dcarota_388_v2.0)
Manihot esculenta (cassava Manihot esculenta v6.1)
Phaseolus vulgaris (common bean Pvulgaris_442_v2.0)
Gossypium hirsutum (cotton Ghir.BGI)
Cucumis sativus (cucumber RefGen_v3)
Phoenix dactylifera (date palm DPV01)
Vitis vinifera (grape IGGP_12x)
Prunus mume (Japanese apricot P.mume_V1.0)
Zea mays (maize RefGen_v3)
P.heterocycla (moso bamboo P.heterocycle 1.0)
Populus trichocarpa (poplar JGI v3.0)
Brassica napus (rapeseed Bra_napus_v2.0)
Oryza sativa (rice IRGSP1.0)
Hevea brasiliensis (rubber reyan7-33-97)
Sorghum bicolor (sorghum Sbiv3.1)
Glycine max (soybean Wm82.a2.v1)
Solanum lycopersicum (tomato SL2.50)
Triticum aestivum (wheat TGACv1)
Position and Type
Variant ID
dbSNP rsid
Reference Location
Variation Type
All
SNP
InDel
Consequence Type
HIGH
MODERATE
LOW
MODIFIER
Annotation Gene Information
Gene ID
Upstream
Downstream
Gene Symbol
Gramene ID
UniprotKB
Biotype
mRNA
rRNA
miRNA
Ontology Term
Ontology Key Words
Minor Allele Frequency
MAF
>=
<=
=
(0-0.5)
ClinVar Traits
Effect
affects
benign
likely benign
likely pathogenic
pathogenic
uncertain significance
association
drug response
not reported for simple variant
protective
risk factor
other
Initial
A(617)
B(256)
C(790)
D(383)
E(256)
F(264)
G(261)
H(1215)
I(179)
J(50)
K(49)
L(264)
M(659)
N(201)
O(147)
P(540)
Q(2)
R(186)
S(485)
T(189)
U(37)
V(65)
W(60)
X(25)
Y(4)
Z(9)
Digit(29)
Other(3)
OMIM Traits
Initial
A(550)
B(245)
C(777)
D(300)
E(255)
F(200)
G(278)
H(1302)
I(136)
J(40)
K(36)
L(256)
M(708)
N(211)
O(142)
P(472)
R(189)
S(442)
T(206)
<
U(29)
V(66)
W(63)
X(14)
Y(2)
Z(2)
Digit(36)
GWAS-Catalog Traits
Ontology
immune system disease(EFO_0000540)
body weights and measures(EFO_0004324)
cancer(EFO_0000311)
cardiovascular disease(EFO_0000319)
cardiovascular measurement(EFO_0004298)
digestive system disease(EFO_0000405)
hematological measurement(EFO_0004503)
inflammatory biomarker measurement(EFO_0004872)
lipid or lipoprotein measurement(EFO_0005105)
liver enzyme measurement(EFO_0004582)
metabolic disease(EFO_0000589)
nervous system disease(EFO_0000618)
response to drug(GO_0042493)
other
Genotype to Phenotype
growth
drought tolerance
metabolite
agronomic traits
resistance
flowering time
forage quality
yield
Pfam
Pfam Accession
Pfam Name
Protein Id
Setting Properties
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Search Results: 6724343
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All
VarID
Position
Alleles
MAF
Consequence Type|Effect
Gene
dbSNP
bta53609958
1:184-185
AC/A
AC:0.0294
bta53609959
1:316
C/CA
C:0.3978
rs435707738
bta53609960
1:352
T/TA
TA:0.3404
rs798508212
bta53609961
1:675-676
GA/G
G:0.0106
bta53609962
1:773-774
TG/T
T:0.0474
bta53609963
1:775
G/GT
GT:0.0158
bta53609964
1:777
T/TTCCAGA
TTC:0.0106
bta53609965
1:797-798
TG/T
T:0.0053
bta53609966
1:1260-1261
AC/A
A:0.0263
bta53609967
1:1277-1279
CAG/C
C:0.0326
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