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Genome Assembly
Animals-----------
Homo sapiens (human GRCh37)
Bos taurus (cattle UMD_3.1)
Gallus gallus (chicken Gallus_gallus-5.0)
Canis familaries (dog CanFam3.1)
Anas platyrhynchos (duck BGI_duck_1.0)
Ailuropoda melanoleuca (giant panda AilMel1)
Capra hircus (goat CHIR_2.0)
Orcinus orca (killer whale Oorcal.1)
Sus scrofa (pig Sscrofa10.2)
Ovis aries (sheep Oar_v4.0)
Plants-----------
Zea mays (maize RefGen_v3)
P.heterocycla (moso bamboo P.heterocycle 1.0)
Populus trichocarpa (poplar JGI v3.0)
Oryza sativa (rice IRGSP1.0)
Hevea brasiliensis (rubber reyan7-33-97)
Sorghum bicolor (sorghum Sorbi3)
Glycine max (soybean Wm82.a2.v1)
Solanum lycopersicum (tomato SL2.50)
Triticum aestivum (wheat TGACv1)
Position and Type
Variant ID
dbSNP rsid
Reference Location
Variation Type
All
SNP
InDel
Consequence Type
HIGH
MODERATE
LOW
MODIFIER
Annotation Gene Information
Gene ID
Upstream
Downstream
Gene Symbol
Gramene ID
UniprotKB
Biotype
mRNA
rRNA
miRNA
Ontology Term
Ontology Key Words
Minor Allele Frequency
MAF
>=
<=
=
(0-0.5)
ClinVar Traits
Effect
affects
benign
likely benign
likely pathogenic
pathogenic
uncertain significance
association
drug response
not reported for simple variant
protective
risk factor
other
Initial
A(617)
B(256)
C(790)
D(383)
E(256)
F(264)
G(261)
H(1215)
I(179)
J(50)
K(49)
L(264)
M(659)
N(201)
O(147)
P(540)
Q(2)
R(186)
S(485)
T(189)
U(37)
V(65)
W(60)
X(25)
Y(4)
Z(9)
Digit(29)
Other(3)
OMIM Traits
Initial
A(550)
B(245)
C(777)
D(300)
E(255)
F(200)
G(278)
H(1302)
I(136)
J(40)
K(36)
L(256)
M(708)
N(211)
O(142)
P(472)
R(189)
S(442)
T(206)
<
U(29)
V(66)
W(63)
X(14)
Y(2)
Z(2)
Digit(36)
GWAS-Catalog Traits
Ontology
immune system disease(EFO_0000540)
body weights and measures(EFO_0004324)
cancer(EFO_0000311)
cardiovascular disease(EFO_0000319)
cardiovascular measurement(EFO_0004298)
digestive system disease(EFO_0000405)
hematological measurement(EFO_0004503)
inflammatory biomarker measurement(EFO_0004872)
lipid or lipoprotein measurement(EFO_0005105)
liver enzyme measurement(EFO_0004582)
metabolic disease(EFO_0000589)
nervous system disease(EFO_0000618)
response to drug(GO_0042493)
other
Genotype to Phenotype
growth
drought tolerance
metabolite
agronomic traits
resistance
flowering time
forage quality
yeild
Setting Properties
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Search Results: 5395412
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All
VarID
Position
Alleles
MAF
Consequence Type|Effect
Gene
dbSNP
oor4821960
NW_004438415.1:666-667
AC/A
A:0.0968
oor4821961
NW_004438415.1:4676-4679
TAAG/T
T:0.0185
oor4821962
NW_004438415.1:7385-7387
GCA/G
G:0.1216
oor4821963
NW_004438415.1:8909-8911
TTA/T
T:0.0606
oor4821964
NW_004438415.1:10017-10019
CAT/C
CAT:0.1000
oor4821965
NW_004438415.1:10892-10893
TA/T
T:0.4500
oor4821966
NW_004438415.1:12211
G/GATC
G:0.1667
oor4821967
NW_004438415.1:12375-12376
CA/C
CA:0.0769
oor4821968
NW_004438415.1:19433
C/CATA
C:0.1818
oor4821969
NW_004438415.1:20530-20533
TAAA/T
T:0.1250
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