Genome Assembly

Position and Type

 
 
 
 

Consequence Type

HIGH             

MODERATE 

LOW             

MODIFIER             

Annotation Gene Information

 
 
 
 
 
 
 
mRNA  rRNA  miRNA
 
 

Minor Allele Frequency

  (0-0.5)

ClinVar Traits

Effect             

     Initial 

OMIM Traits

    Initial         

GWAS-Catalog Traits

Ontology             

Genotype to Phenotype

growth
drought tolerance
metabolite
agronomic traits
resistance
flowering time
forage quality
yield

Pfam

 
 
 

Setting Properties

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All VarID
Position
Alleles
MAF
Consequence Type|Effect
Gene
dbSNP
zma1 chr1:46059 C/T T: synonymous_variant|LOW Zm00001d027230  
downstream_gene_variant|MODIFIER Zm00001d027231
zma2 chr1:46115 G/A A: synonymous_variant|LOW Zm00001d027230  
downstream_gene_variant|MODIFIER Zm00001d027231
zma3 chr1:46243 A/C C: missense_variant|MODERATE Zm00001d027230  
downstream_gene_variant|MODIFIER Zm00001d027231
zma4 chr1:46250 G/A A: missense_variant|MODERATE Zm00001d027230  
downstream_gene_variant|MODIFIER Zm00001d027231
zma5 chr1:46254 G/C C: missense_variant|MODERATE Zm00001d027230  
downstream_gene_variant|MODIFIER Zm00001d027231
zma6 chr1:46313 C/A A: missense_variant|MODERATE Zm00001d027230  
downstream_gene_variant|MODIFIER Zm00001d027231
zma7 chr1:46459 T/C C: synonymous_variant|LOW Zm00001d027230  
downstream_gene_variant|MODIFIER Zm00001d027231
zma8 chr1:46521 T/C C: missense_variant|MODERATE Zm00001d027230  
downstream_gene_variant|MODIFIER Zm00001d027231
zma9 chr1:46538 C/T T: synonymous_variant|LOW Zm00001d027230  
downstream_gene_variant|MODIFIER Zm00001d027231
zma10 chr1:46545 A/G G: missense_variant|MODERATE Zm00001d027230  
downstream_gene_variant|MODIFIER Zm00001d027231