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Genome Assembly

Position and Type

 
 
 
 

Consequence Type

HIGH             

MODERATE 

LOW             

MODIFIER             

Annotation Gene Information

 
 
 
 
 
 
 
mRNA　 rRNA　 miRNA
 
 

Minor Allele Frequency

  (0-0.5)

ClinVar Traits

Effect             

     Initial 

OMIM Traits

    Initial         

GWAS-Catalog Traits

Ontology             

Genotype to Phenotype

growth
drought tolerance
metabolite
agronomic traits
resistance
flowering time
forage quality
yield

Pfam

 
 
 

Setting Properties

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All VarID
 Position
 Alleles
 MAF
 Consequence Type|Effect
 Gene
 dbSNP
smil8817882 scaffold1402:202-209 CCTCCCCT/C C:0.2500 intergenic_variant|MODIFIER;  
smil8817883 scaffold1402:203-204 CT/C C:0.1667 intergenic_variant|MODIFIER;  
smil8817884 scaffold1402:208-209 CT/C C:0.1667 intergenic_variant|MODIFIER;  
smil8817885 scaffold1402:254-255 CT/C C:0.3333 intergenic_variant|MODIFIER;  
smil8817886 scaffold1402:255-256 TC/T,* TC:0.2500 intergenic_variant|MODIFIER;  
smil8817887 scaffold1402:307 A/ATATAAATATAAT A:0.0000 intergenic_variant|MODIFIER;  
smil8817888 scaffold1402:356 G/GCTCACCA GCTCACCA:0.2500 intergenic_variant|MODIFIER;  
smil8817889 scaffold1402:481 T/TGAAA T:0.0000 intergenic_variant|MODIFIER;  
smil8817890 scaffold1402:1261 A/AG A:0.0000 intergenic_variant|MODIFIER;  
smil8817891 scaffold1402:1380-1381 CT/C CT:0.5000 intergenic_variant|MODIFIER;