Genome Assembly

Position and Type

 
 
 
 

Consequence Type

HIGH             

MODERATE 

LOW             

MODIFIER             

Annotation Gene Information

 
 
 
 
 
 
 
mRNA  rRNA  miRNA
 
 

Minor Allele Frequency

  (0-0.5)

ClinVar Traits

Effect             

     Initial 

OMIM Traits

    Initial         

GWAS-Catalog Traits

Ontology             

Genotype to Phenotype

growth
drought tolerance
metabolite
agronomic traits
resistance
flowering time
forage quality
yeild

Pfam

 
 
 

Setting Properties

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All VarID
Position
Alleles
MAF
Consequence Type|Effect
Gene
dbSNP
pda13400841 Contig100001.1:47 C/CAT CAT:0.3750  
pda13400842 Contig100001.1:50 G/GGT GGT:0.3750  
pda13400843 Contig100001.1:179-216 T/T TTA:0.4359  
pda13400844 Contig100001.1:187 C/C,* CTA:0.4500  
pda13400845 Contig100001.1:262-263 T/T T:0.1327  
pda13400846 Contig100001.1:437-438 C/C C:0.4375  
pda13400847 Contig100003.1:502 T/TAA T:0.4000  
pda13400848 Contig100003.1:508-516 C/C C:0.1000  
pda13400849 Contig100005.1:57-63 A/A A:0.0100  
pda13400850 Contig100005.1:180 T/TC TC:0.0233