Genome Assembly

Position and Type

 
 
 
 

Consequence Type

HIGH             

MODERATE 

LOW             

MODIFIER             

Annotation Gene Information

 
 
 
 
 
 
 
mRNA  rRNA  miRNA
 
 

Minor Allele Frequency

  (0-0.5)

ClinVar Traits

Effect             

     Initial 

OMIM Traits

    Initial         

GWAS-Catalog Traits

Ontology             

Genotype to Phenotype

growth
drought tolerance
metabolite
agronomic traits
resistance
flowering time
forage quality
yeild

Pfam

 
 
 

Setting Properties

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Items  1  - 10 of 18161579       Items per page  First Prev of 1816158 Next Last
All VarID
Position
Alleles
MAF
Consequence Type|Effect
Gene
dbSNP
osa1 chr1:1151 C/A A:0.0111 upstream_gene_variant|MODIFIER Os01g0100100  
osa2 chr1:1162 C/T T:0.0006 upstream_gene_variant|MODIFIER Os01g0100100  
osa3 chr1:1184 G/A A:0.0054 upstream_gene_variant|MODIFIER Os01g0100100  
osa4 chr1:1203 T/C C:0.1492 upstream_gene_variant|MODIFIER Os01g0100100  
osa5 chr1:1223 G/C C:0.0022 upstream_gene_variant|MODIFIER Os01g0100100  
osa6 chr1:1238 C/T T:0.0018 upstream_gene_variant|MODIFIER Os01g0100100  
osa7 chr1:1249 A/C C:0.1459 upstream_gene_variant|MODIFIER Os01g0100100  
osa8 chr1:1266 G/A A:0.1027 upstream_gene_variant|MODIFIER Os01g0100100  
osa9 chr1:1277 T/C C:0.1254 upstream_gene_variant|MODIFIER Os01g0100100  
osa10 chr1:1293 C/T T:0.0065 upstream_gene_variant|MODIFIER Os01g0100100