Genome Assembly

Position and Type

 
 
 
 

Consequence Type

HIGH             

MODERATE 

LOW             

MODIFIER             

Annotation Gene Information

 
 
 
 
 
 
 
mRNA  rRNA  miRNA
 
 

Minor Allele Frequency

  (0-0.5)

ClinVar Traits

Effect             

     Initial 

OMIM Traits

    Initial         

GWAS-Catalog Traits

Ontology             

Genotype to Phenotype

growth
drought tolerance
metabolite
agronomic traits
resistance
flowering time
forage quality
yeild

Setting Properties

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Items  1  - 10 of 16739583       Items per page  First Prev of 1673959 Next Last
All VarID
Position
Alleles
MAF
Consequence Type|Effect
Gene
dbSNP
Database
hsa277 1:715348 T/G T:0.0000 upstream_gene_variant|MODIFIER; intron_variant|MODIFIER; non_coding_transcript_variant|MODIFIER ENSG00000237491 (RP11-206L10.9) rs3131984
upstream_gene_variant|MODIFIER ENSG00000228327 (RP11-206L10.2)
hsa543 1:758324 T/C T:0.0000 downstream_gene_variant|MODIFIER ENSG00000177757 (FAM87B) rs3131955
downstream_gene_variant|MODIFIER ENSG00000225880 (LINC00115)
upstream_gene_variant|MODIFIER ENSG00000228794 (LINC01128)
hsa638 1:775426 G/A G:0.0000 intron_variant|MODIFIER; non_coding_transcript_variant|MODIFIER ENSG00000228794 (LINC01128) rs2905037
hsa650 1:778569 A/G A:0.0000 downstream_gene_variant|MODIFIER; intron_variant|MODIFIER; non_coding_transcript_variant|MODIFIER ENSG00000228794 (LINC01128) rs2977615
hsa658 1:780027 G/T G:0.0000 downstream_gene_variant|MODIFIER; intron_variant|MODIFIER; non_coding_transcript_variant|MODIFIER ENSG00000228794 (LINC01128) rs2977613
hsa762 1:799463 T/C T:0.0000 downstream_gene_variant|MODIFIER ENSG00000228794 (LINC01128) rs4245756
downstream_gene_variant|MODIFIER ENSG00000230368 (FAM41C)
hsa803 1:807512 A/G A:0.0000 upstream_gene_variant|MODIFIER ENSG00000234711 (TUBB8P11) rs10751454
upstream_gene_variant|MODIFIER; intron_variant|MODIFIER; non_coding_transcript_variant|MODIFIER ENSG00000230368 (FAM41C)
hsa822 1:812751 T/C T:0.0000 downstream_gene_variant|MODIFIER ENSG00000234711 (TUBB8P11) rs4246500
upstream_gene_variant|MODIFIER ENSG00000230368 (FAM41C)
hsa1413 1:842825 A/G A:0.0000 upstream_gene_variant|MODIFIER ENSG00000230699 (RP11-54O7.1) rs7519340
intron_variant|MODIFIER; non_coding_transcript_variant|MODIFIER ENSG00000272438 (RP11-54O7.16)
hsa1434 1:847250 G/A G:0.0000 downstream_gene_variant|MODIFIER ENSG00000223764 (RP11-54O7.3) rs7416129
upstream_gene_variant|MODIFIER ENSG00000241180 (RP11-54O7.2)
intron_variant|MODIFIER; non_coding_transcript_variant|MODIFIER ENSG00000272438 (RP11-54O7.16)
intron_variant|MODIFIER; non_coding_transcript_variant|MODIFIER ENSG00000230699 (RP11-54O7.1)