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GVM
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Genome Assembly
Animals-----------
Homo sapiens (human GRCh37)
Felis catus (cat Felis_catus_9.0)
Bos taurus (cattle UMD_3.1)
Gallus gallus (chicken Gallus_gallus-5.0)
Canis familaries (dog CanFam3.1)
Anas platyrhynchos (duck BGI_duck_1.0)
Ailuropoda melanoleuca (giant panda AilMel1)
Ailuropoda melanoleuca (giant panda ASM200744v2)
Equus caballus (horse EquCab2.0)
Capra hircus (goat CHIR_2.0)
Orcinus orca (killer whale Oorcal.1)
Sus scrofa (pig Sscrofa10.2)
Ailurus fulgens (lesser panda ASM200746v1)
Manis javanica (malayan pangolin YNU_ManJav_2.0)
Ovis aries (sheep Oar_v4.0)
Anser cygnoides (swan goose PRJNA183603_v1.0)
Equus ferus (tarpan EquCab2.0)
Bos mutus (wild yak BosGru_v2.0)
Plants-----------
Catharanthus roseus (catharanthus roseus ASM94934v1)
Cannabis sativa (cannabis GCF_900626175.1)
Daucus carota (carrot Dcarota_388_v2.0)
Setaria italica (Foxtail millet Setaria_italica_v2.0)
Manihot esculenta (cassava Manihot esculenta v6.1)
Phaseolus vulgaris (common bean Pvulgaris_442_v2.0)
Gossypium hirsutum (cotton Ghir.BGI)
Vigna unguiculata (cowpea ASM411807v2)
Cucumis sativus (cucumber RefGen_v3)
Phoenix dactylifera (date palm DPV01)
Brassica rapa (field mustard CAAS_Brap_v3.01)
Ganoderma lucidum (ganoderma GanLuc1.0)
Vitis vinifera (grape IGGP_12x)
Prunus mume (Japanese apricot P.mume_V1.0)
Jatropha curcas (jatropha JatCur_1.0)
Zea mays (maize RefGen_v4)
P.heterocycla (moso bamboo P.heterocycle 1.0)
Capsicum annuum (pepper Zunla 1 Ref_v1.0)
Fagopyrum tataricum (Tartary Buckwheat Pinku1)
Populus trichocarpa (poplar JGI v3.0)
Brassica napus (rapeseed Bra_napus_v2.0)
Oryza sativa (rice IRGSP1.0)
Hevea brasiliensis (rubber reyan7-33-97)
Secale cereale (rye Lo7)
Salvia miltiorrhiza (salvia miltiorrhiza Salvia_genome)
Sorghum bicolor (sorghum Sbiv3.1)
Sorghum bicolor V2 (sorghum Sbiv3.1)
Glycine max (soybean Wm82.a2.v1)
Ipomoea batatas (Sweet potato pasi3)
Solanum lycopersicum (tomato SL2.50)
Triticum aestivum (wheat TGACv1)
Triticum aestivum (wheat IWGSC1.0)
Triticum urartu (diploid wheat IGDBv1)
Virus-----------
SARS-CoV-2 (2019-nCoV MN908947.3)
SRAS-CoV (SARS NC_004718.3)
MERS-CoV (MERS NC_019843.3)
Position and Type
Variant ID
dbSNP rsid
Reference Location
Variation Type
All
SNP
InDel
Consequence Type
HIGH
MODERATE
LOW
MODIFIER
Annotation Gene Information
Gene ID
Upstream
Downstream
Gene Symbol
Gramene ID
UniprotKB
Biotype
mRNA
rRNA
miRNA
Ontology Term
Ontology Key Words
Minor Allele Frequency
MAF
>=
<=
=
(0-0.5)
ClinVar Traits
Effect
affects
benign
likely benign
likely pathogenic
pathogenic
uncertain significance
association
drug response
not reported for simple variant
protective
risk factor
other
Initial
A(617)
B(256)
C(790)
D(383)
E(256)
F(264)
G(261)
H(1215)
I(179)
J(50)
K(49)
L(264)
M(659)
N(201)
O(147)
P(540)
Q(2)
R(186)
S(485)
T(189)
U(37)
V(65)
W(60)
X(25)
Y(4)
Z(9)
Digit(29)
Other(3)
OMIM Traits
Initial
A(550)
B(245)
C(777)
D(300)
E(255)
F(200)
G(278)
H(1302)
I(136)
J(40)
K(36)
L(256)
M(708)
N(211)
O(142)
P(472)
R(189)
S(442)
T(206)
<
U(29)
V(66)
W(63)
X(14)
Y(2)
Z(2)
Digit(36)
GWAS-Catalog Traits
Ontology
immune system disease(EFO_0000540)
body weights and measures(EFO_0004324)
cancer(EFO_0000311)
cardiovascular disease(EFO_0000319)
cardiovascular measurement(EFO_0004298)
digestive system disease(EFO_0000405)
hematological measurement(EFO_0004503)
inflammatory biomarker measurement(EFO_0004872)
lipid or lipoprotein measurement(EFO_0005105)
liver enzyme measurement(EFO_0004582)
metabolic disease(EFO_0000589)
nervous system disease(EFO_0000618)
response to drug(GO_0042493)
other
Genotype to Phenotype
growth
drought tolerance
metabolite
agronomic traits
resistance
flowering time
forage quality
yield
Pfam
Pfam Accession
Pfam Name
Protein Id
Setting Properties
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Search Results: 1484245
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VarID
Position
Alleles
MAF
Consequence Type|Effect
Gene
dbSNP
apla8342395
KB742833.1:96-103
GTACAGTT/G
G:0.2500
upstream_gene_variant|MODIFIER;
ENSAPLG00000013871
(POLR1A)
apla8342396
KB742833.1:159-168
GTAAAGAATT/G
GTAAAGAATT:0.5000
upstream_gene_variant|MODIFIER;
ENSAPLG00000013871
(POLR1A)
apla8342397
KB742833.1:403-434
CATGTATCTTTTGTTTTTTTATTATTTTTAAG/C
CATGTATCTTTTGTTTTTTTATTATTTTTAAG:0.5000
upstream_gene_variant|MODIFIER;
ENSAPLG00000013871
(POLR1A)
apla8342398
KB742833.1:423-468
ATTATTTTTAAGCTATTGATGAAACCTGTGTCTTTGTTTTTTTTGT/A
ATTATTTTTAAGCTATTGATGAAACCTGTGTCTTTGTTTTTTTTGT:0.5000
upstream_gene_variant|MODIFIER;
ENSAPLG00000013871
(POLR1A)
apla8342399
KB742833.1:437-450
ATTGATGAAACCTG/A
ATTGATGAAACCTG:0.5000
upstream_gene_variant|MODIFIER;
ENSAPLG00000013871
(POLR1A)
apla8342400
KB742833.1:919
A/ATC
ATC:0.2500
intron_variant|MODIFIER;
ENSAPLG00000013871
(POLR1A)
apla8342401
KB742833.1:1288-1289
AT/A
A:0.2500
splice_region_variant|LOW; intron_variant|MODIFIER;
ENSAPLG00000013871
(POLR1A)
apla8342402
KB742833.1:1289
T/TAAAAAAAAA
TAAAAAAAAA:0.2500
intron_variant|MODIFIER;
ENSAPLG00000013871
(POLR1A)
apla8342403
KB742833.1:1292-1293
AT/A
A:0.2500
intron_variant|MODIFIER;
ENSAPLG00000013871
(POLR1A)
apla8342404
KB742833.1:1298
A/AAT
AAT:0.2500
intron_variant|MODIFIER;
ENSAPLG00000013871
(POLR1A)
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