Genome Assembly

Position and Type

 
 
 
 

Consequence Type

HIGH             

MODERATE 

LOW             

MODIFIER             

Annotation Gene Information

 
 
 
 
 
 
 
mRNA  rRNA  miRNA
 
 

Minor Allele Frequency

  (0-0.5)

ClinVar Traits

Effect             

     Initial 

OMIM Traits

    Initial         

GWAS-Catalog Traits

Ontology             

Genotype to Phenotype

growth
drought tolerance
metabolite
agronomic traits
resistance
flowering time
forage quality
yield

Pfam

 
 
 

Setting Properties

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All VarID
Position
Alleles
MAF
Consequence Type|Effect
Gene
dbSNP
ssc64710747 1:225451 C/CA C: downstream_gene_variant|MODIFIER ENSSSCG00000029697 rs697048573
ssc64710908 1:271379 A/AT A: upstream_gene_variant|MODIFIER ENSSSCG00000029697  
ssc64710909 1:271381 G/GT G: upstream_gene_variant|MODIFIER ENSSSCG00000029697  
ssc64710987 1:308158-308159 CG/C CG: intergenic_variant|MODIFIER -  
ssc64711156 1:390326 G/GA G: intergenic_variant|MODIFIER -  
ssc64711168 1:405702 C/CA C: intergenic_variant|MODIFIER -  
ssc64711169 1:410725-410732 TCTCGTAA/T TCTCGTAA: intergenic_variant|MODIFIER -  
ssc64711171 1:462927-462928 CA/C CA: intergenic_variant|MODIFIER -  
ssc64711174 1:463007 T/TG T: intergenic_variant|MODIFIER -  
ssc64711220 1:485355 G/GT G: intergenic_variant|MODIFIER -