Materials for Manihot esculenta

GVMSampleID SampleName Organism Cultivar Geographic Material Coverage ProjectAcc SampleAcc PubmedID Dev_stage AssayType LibraryLayout Platform Instrument CenterName Biomaterial_provider
mes.s1 Akena Manihot esculenta Akena Eastern Africa,Uganda Leaf 80.77x SRP041115 SRS1138179 18214421 Seedling WGS PAIRED ILLUMINA Illumina HiSeq 2000 DOE-JOINT GENOME INSTITUTE NA
mes.s10 EE04 Manihot esculenta Muzege Eastern Africa,Tanzania Leaf 199.24x SRP041115 SRS597347 18214421 NA WGS PAIRED ILLUMINA Illumina HiSeq 2000 DOE-JOINT GENOME INSTITUTE Biosciences East and Central Africa, Kenya
mes.s11 EE05-AR37-80 Manihot esculenta AR37-80 NA Leaf 67.77x SRP041115 SRS594178 18214421 NA WGS PAIRED ILLUMINA Illumina HiSeq 2000 DOE-JOINT GENOME INSTITUTE Biosciences East and Central Africa, Kenya
mes.s12 EE06 Manihot esculenta NDL06/132 Eastern Africa,Tanzania Leaf 121.69x SRP041115 SRS597350 18214421 NA WGS PAIRED ILLUMINA Illumina HiSeq 2000 DOE-JOINT GENOME INSTITUTE Biosciences East and Central Africa, Kenya
mes.s13 EE07 Manihot esculenta Kiroba Eastern Africa,Tanzania Leaf 92.85x SRP041115 SRS597343 18214421 NA WGS PAIRED ILLUMINA Illumina HiSeq 2000 DOE-JOINT GENOME INSTITUTE Biosciences East and Central Africa, Kenya
mes.s14 EE08 Manihot esculenta AR40-6 NA Leaf 86.18x SRP041115 SRS597342 18214421 NA WGS PAIRED ILLUMINA Illumina HiSeq 2000 DOE-JOINT GENOME INSTITUTE Biosciences East and Central Africa, Kenya
mes.s15 EE09 Manihot esculenta TM3 NA Leaf 121.47x SRP041115 SRS597334 18214421 NA WGS PAIRED ILLUMINA Illumina HiSeq 2000 DOE-JOINT GENOME INSTITUTE International Institute of Tropical Agriculture, Nigeria
mes.s16 EE10-TME7 Manihot esculenta TM7 NA Leaf 40.39x SRP041115 SRS597336 18214421 NA WGS PAIRED ILLUMINA Illumina HiSeq 2000 DOE-JOINT GENOME INSTITUTE International Institute of Tropical Agriculture, Nigeria
mes.s17 EE11 Manihot esculenta MCOL22_1 NA Leaf 22.06x SRP041115 SRS597337 18214421 NA WGS PAIRED ILLUMINA Illumina HiSeq 2000 DOE-JOINT GENOME INSTITUTE International Center for Tropical Agriculture (CIAT), Colombia
mes.s18 EE12 Manihot esculenta MCOL22_2 NA Leaf 70.26x SRP041115 SRS597338 18214421 NA WGS PAIRED ILLUMINA Illumina HiSeq 2000 DOE-JOINT GENOME INSTITUTE International Center for Tropical Agriculture (CIAT), Colombia
mes.s19 EE13 Manihot esculenta Kibandameno NA Leaf 67.71x SRP041115 SRS597340 18214421 NA WGS PAIRED ILLUMINA Illumina HiSeq 2000 DOE-JOINT GENOME INSTITUTE Mikocheni Agricultural Research Institute, Tanzania
mes.s2 Aulizaye-Mjinga Manihot esculenta Aulizaye Mjinga Eastern Africa,Tanzania Leaf 68.30x SRP041115 SRS1138177 18214421 Seedling WGS PAIRED ILLUMINA Illumina HiSeq 2000 DOE-JOINT GENOME INSTITUTE NA
mes.s20 EE16A Manihot esculenta SC8 NA Leaf 61.82x SRP041115 SRS597351 18214421 NA WGS PAIRED ILLUMINA Illumina HiSeq 2000 DOE-JOINT GENOME INSTITUTE Shanghai Institute for Biological Sciences, China
mes.s21 EE17A Manihot esculenta TMS60444 NA Leaf 103.29x SRP041115 SRS597352 18214421 NA WGS PAIRED ILLUMINA Illumina HiSeq 2000 DOE-JOINT GENOME INSTITUTE International Institute of Tropical Agriculture, Nigeria
mes.s22 EE18A-AM560-2 Manihot esculenta AM560-2 South America,Colombia Leaf 521.53x SRP041115 SRS591163 18214421 NA WGS PAIRED ILLUMINA Illumina HiSeq 2000 DOE-JOINT GENOME INSTITUTE International Center for Tropical Agriculture (CIAT), Colombia
mes.s23 FLA-433-2 Manihot esculenta subsp. flabellifolia FLA 433-2 South America,Brazil,Rondonia Leaf 114.38x SRP041115 SRS1138169 18214421 Seedling WGS PAIRED ILLUMINA Illumina HiSeq 2500 DOE-JOINT GENOME INSTITUTE NA
mes.s24 FLA-496-1 Manihot esculenta subsp. flabellifolia FLA 496-1 South America,Brazil,Tocantins Leaf 114.53x SRP041115 SRS1138165 18214421 Seedling WGS PAIRED ILLUMINA Illumina HiSeq 2500 DOE-JOINT GENOME INSTITUTE NA
mes.s25 FLA-XXX-15 Manihot esculenta subsp. flabellifolia FLA XXX-15 South America,Brazil Leaf 113.30x SRP041115 SRS1138162 18214421 Seedling WGS PAIRED ILLUMINA Illumina HiSeq 2500 DOE-JOINT GENOME INSTITUTE NA
mes.s26 Gp0009926 Manihot esculenta Albert NA NA 34.93x SRP081798 SRS1615289 NA NA WGS PAIRED ILLUMINA Illumina HiSeq 2000 JGI NA
mes.s27 KU50XSC124-F1 Manihot esculenta KU50XSC124 NA Leaf 39.96x SRP072763 SRS603938 NA NA WGS PAIRED ILLUMINA Illumina HiSeq 2500 THE INSTITUTE OF TROPICAL BIOSCIENCE AND BIOTECHNO ITBB
mes.s28 MBRA685 Manihot esculenta MBra685 South America,Brazil Leaf 85.40x SRP041115 SRS1138157 18214421 Seedling WGS PAIRED ILLUMINA Illumina HiSeq 2000 DOE-JOINT GENOME INSTITUTE NA
mes.s29 MCOL-1468 Manihot esculenta MCOL 1468 South America,Brazil Leaf 123.33x SRP041115 SRS1138156 18214421 Seedling WGS PAIRED ILLUMINA Illumina HiSeq 2500 DOE-JOINT GENOME INSTITUTE NA
mes.s3 Avoca Manihot esculenta Avoca Oceania,Australia Leaf 55.38x SRP041115 SRS1138176 18214421 Seedling WGS PAIRED ILLUMINA Illumina HiSeq 2000 DOE-JOINT GENOME INSTITUTE NA
mes.s30 Me001Vu Manihot esculenta Me001Vu Oceania,Vanuatu,Island of Santo Leaf 130.16x SRP041115 SRS1138155 18214421 Seedling WGS PAIRED ILLUMINA Illumina HiSeq 2000 DOE-JOINT GENOME INSTITUTE NA
mes.s31 Me004Vu Manihot esculenta Me004Vu Oceania,Vanuatu,Island of Santo Leaf 106.71x SRP041115 SRS1138152 18214421 Seedling WGS PAIRED ILLUMINA Illumina HiSeq 2000 DOE-JOINT GENOME INSTITUTE NA
mes.s32 Merelesita Manihot esculenta Merelesita Oceania,Fiji Leaf 50.87x SRP041115 SRS1138151 18214421 Seedling WGS PAIRED ILLUMINA Illumina HiSeq 2000 DOE-JOINT GENOME INSTITUTE NA
mes.s33 NedeleiB Manihot esculenta Nedelei(B) Oceania,Fiji,Viti Levu Leaf 34.05x SRP041115 SRS1138150 18214421 Seedling WGS PAIRED ILLUMINA Illumina HiSeq 2000 DOE-JOINT GENOME INSTITUTE NA
mes.s34 NedeleiU Manihot esculenta Nedelei(U) Oceania,Fiji,Viti Levu Leaf 29.10x SRP041115 SRS1138149 18214421 Seedling WGS PAIRED ILLUMINA Illumina HiSeq 2000 DOE-JOINT GENOME INSTITUTE NA
mes.s35 PSE-XXX-1 Manihot pseudoglaziovii PSE XXX-1 South America,Brazil Leaf 68.46x SRP041115 SRS1138148 18214421 Seedling WGS PAIRED ILLUMINA Illumina HiSeq 2000 DOE-JOINT GENOME INSTITUTE NA
mes.s36 SMI150 Manihot esculenta SMI150 NA Leaf 50.96x SRP041115 SRS1138147 18214421 Seedling WGS PAIRED ILLUMINA Illumina HiSeq 2000 DOE-JOINT GENOME INSTITUTE NA
mes.s37 TME-117 Manihot esculenta TME 117 Western Africa,Nigeria Leaf 119.02x SRP041115 SRS1138146 18214421 Seedling WGS PAIRED ILLUMINA Illumina HiSeq 2500 DOE-JOINT GENOME INSTITUTE NA
mes.s38 TME-14K Manihot esculenta TME 14K NA Leaf 113.45x SRP041115 SRS1138145 18214421 Seedling WGS PAIRED ILLUMINA Illumina HiSeq 2500 DOE-JOINT GENOME INSTITUTE NA
mes.s39 TME-204 Manihot esculenta TME 204 Eastern Africa,Uganda Leaf 77.46x SRP041115 SRS1138144 18214421 Seedling WGS PAIRED ILLUMINA Illumina HiSeq 2000 DOE-JOINT GENOME INSTITUTE NA
mes.s4 BRA-856 Manihot esculenta BRA 856 South America,Brazil,Pernambuco Leaf 134.04x SRP041115 SRS1138175 18214421 Seedling WGS PAIRED ILLUMINA Illumina HiSeq 2500 DOE-JOINT GENOME INSTITUTE NA
mes.s40 TME-419 Manihot esculenta TME 419 Western Africa,Nigeria Leaf 77.47x SRP041115 SRS1138143 18214421 Seedling WGS PAIRED ILLUMINA Illumina HiSeq 2000 DOE-JOINT GENOME INSTITUTE NA
mes.s41 TMS-30572 Manihot esculenta TMS 30572 Western Africa,Nigeria Leaf 130.98x SRP041115 SRS1138142 18214421 Seedling WGS PAIRED ILLUMINA Illumina HiSeq 2500 DOE-JOINT GENOME INSTITUTE NA
mes.s42 TMS30395 Manihot esculenta TMS30395 Eastern Africa,Mozambique Leaf 70.49x SRP041115 SRS1138140 18214421 Seedling WGS PAIRED ILLUMINA Illumina HiSeq 2000 DOE-JOINT GENOME INSTITUTE NA
mes.s43 UnkAus Manihot esculenta UnkAus Oceania,Australia Leaf 62.47x SRP041115 SRS1138139 18214421 Seedling WGS PAIRED ILLUMINA Illumina HiSeq 2000 DOE-JOINT GENOME INSTITUTE NA
mes.s5 CM-3306-4 Manihot esculenta CM 3306-4 South America,Colombia Leaf 75.10x SRP041115 SRS1138173 18214421 Seedling WGS PAIRED ILLUMINA Illumina HiSeq 2000 DOE-JOINT GENOME INSTITUTE NA
mes.s6 Cassava-K-family Manihot esculenta F1 intercross cultivars TMS30572 x CM2177-2 (K-family) South America,Colombia,Palmira Leaf 95.68x SRP061250 SRS994323 27585926 Vegetative WGS SINGLE ILLUMINA Illumina HiSeq 2000 Universidad Nacional de Colombia International Center for Tropical Agriculture (CIAT)
mes.s7 EBW-2 Manihot esculenta EBW-2 Eastern Africa,Uganda Leaf 116.66x SRP041115 SRS1138172 18214421 Seedling WGS PAIRED ILLUMINA Illumina HiSeq 2500 DOE-JOINT GENOME INSTITUTE NA
mes.s8 EE01 Manihot esculenta Mkombozi Eastern Africa,Tanzania Leaf 112.37x SRP041115 SRS597346 18214421 NA WGS PAIRED ILLUMINA Illumina HiSeq 2000 DOE-JOINT GENOME INSTITUTE Biosciences East and Central Africa, Kenya
mes.s9 EE03 Manihot esculenta Nachinyaya Eastern Africa,Tanzania Leaf 128.80x SRP041115 SRS597348 18214421 NA WGS PAIRED ILLUMINA Illumina HiSeq 2000 DOE-JOINT GENOME INSTITUTE Biosciences East and Central Africa, Kenya