Name Samples Material Technology Platform Data Type Coverage Description Author Journal Year PMID
SRP071318 3 blood/female WGS Illumina HiSeq 4000 PAIRED ~72x Genomic analysis reveals selection in Chinese native black pig Fu Y et al. Scientific Reports 2016 27808243
SRP052927 2 Blood WGS Illumina HiSeq 2000 PAIRED ~16x A genome-wide scan for signatures of directional selection in domesticated pigs Moon S et al. BMC Genomics 2015 25765548
SRP047260 70 Muscle/Blood WGS Illumina HiSeq 2000 PAIRED ~10x Exploring the genetic signature of body size in Yucatan miniature pig Kim H et al. PLoS One 2015 25885114
ERP011076 94 Blood WGS Illumina HiSeq 2000 PAIRED ~10x Evidence of long-term gene flow and selection during domestication from analyses of Eurasian wild and domestic pig genomes Frantz LA et al. Nature Genetics 2015 26323058
ERP010412 17 Blood WGS Illumina HiSeq 2000 PAIRED ~10x Using genome-wide measures of coancestry to maintain diversity and fitness in endangered and domestic pig populations Bosse M et al. Genome Research 2015 26063737
SRP028348 69 Ear WGS Illumina HiSeq 2000 PAIRED ~21x Adaptation and possible ancient interspecies introgression in pigs identified by whole-genome sequencing Lusheng Huang et. al. Nature Genetics 2014 25621459
SRP049499 14 Whole-blood WGS Illumina HiSeq 2000 PAIRED ~13x Genome-wide detection and characterization of positive selection in Korean Native Black Pig from Jeju Island Jaemin Kim et. al. BMC Genetics 2015 25634476
SRP059580 10 Blood WGS Illumina HiSeq 2000 PAIRED ~8x Exploring evidence of positive selection reveals genetic basis of meat quality traits in Berkshire pigs through whole genome sequencing Hyeonsoo Jeong et. al. BMC Genetics 2015 26289667
SRP018123 45 Ear WGS Illumina HiSeq 2000 PAIRED ~4.25x Genomic analyses identify distinct patterns of selection in domesticated pigs and Tibetan wild boars Mingzhou Li et. al. Nature Genetics 2013 24162736
pigVar 30 Na Na Na Na Na PigVar: a database of pig variations and positive selection signature Zhou ZY et. al. Database (Oxford) 2017 29220438