Name Samples Material Technology Platform Data Type Coverage Description Author Journal Year PMID
DRP003109 51 blood WGS Illumina HiSeq 2500 PAIRED 4~12x Genetic features of red and green junglefowls and relationship with Indonesian native chickens Sumatera and Kedu Hitam Ulfah M et al. BMC Genomics 2016 27142387
SRP022583 2 blood WGS Illumina Genome Analyzer IIx PAIRED ~24x Genome-wide patterns of genetic variation in two domestic chickens Fan WL et al. Genome Biol Evol 2013 23814129
SRP061672 9 blood WGS Illumina HiSeq 2000 PAIRED ~9.8x Whole genome resequencing for 3 different domesticated chicken breeds (White Leghorn, Korea domestic and Araucana) TheragenEtex NA NA NA
SRP062207 12 blood WGS Illumina HiSeq 2000 PAIRED ~25x enome-wide analysis reveals the extent of EAV-HP integration in domestic chicken Wragg D et al. BMC Genomics 2015 26466991
SRP068802 8 blood WGS Illumina HiSeq 2000 PAIRED ~14.5x Genome Resequencing Identifies Unique Adaptations of Tibetan Chickens to Hypoxia and High-Dose Ultraviolet Radiation in High-Altitude Environments Zhang Q et al. Genome Biol Evol 2016 26907498
SRP090382 18 muscle WGS Illumina HiSeq 2500 PAIRED ~8.6x whole genome re-sequencing of a set of diverse chickens Hunan Agricultural University NA NA NA
SRP094614 4 blood WGS Illumina HiSeq 2500 PAIRED ~28.5x Genome-wide standing variation facilitates long-term response to bidirectional selection for antibody response in chickens Lillie M et al. BMC Genomics 2017 28100171
SRP056845 6 blood WGS Illumina HiSeq 2000 PAIRED ~17.6x Genome-wide identification of copy number variations between two chicken lines that differ in genetic resistance to Marek's disease Yan Y et al. BMC Genomics 2015 26492869
SRP096151 2 blood WGS Illumina HiSeq 2000 PAIRED ~10x Genome sequencing data for chicken, cattle, sheep and goat Sichuan Agricultural University NA NA NA