Solanum lycopersicum
● Number of Chromosomes: 12
● Number of Unplaced Scaffolds: 31328
● Number of Protein-coding Genes: 33837
● Number of transcripts: 38762
● Lin T et al. 2014 —342 accessions [3]
● 100 Tomato Genome Sequencing Consortium. 2014 – 82 accessions [4].
[1] The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 485(7400):635-641. [PMID=22660326]
[2] Tieman D, Zhu G, Resende MF, Jr., Lin T, Nguyen C, Bies D, Rambla JL, Beltran KS, Taylor M, Zhang B, Ikeda H, Liu Z, Fisher J, Zemach I, Monforte A, Zamir D, Granell A, Kirst M, Huang S, Klee H: A chemical genetic roadmap to improved tomato flavor. Science, 355(6323):391-394. [PMID=28126817]
[3] Lin T, Zhu G, Zhang J, Xu X, Yu Q, Zheng Z, Zhang Z, Lun Y, Li S, Wang X, Huang Z, Li J, Zhang C, Wang T, Zhang Y, Wang A, Lin K, Li C, Xiong G, Xue Y, Mazzucato A, Causse M, Fei Z, Giovannoni JJ, Chetelat RT, Zamir D, Stadler T, Ye Z, Du Y, Huang S: Genomic analyses provide insights into the history of tomato breeding. Nat Genet, 46(11):1220-1226. [PMID=25305757]
[4] Aflitos S, Schijlen E, de Jong H, de Ridder D, Smit S, Finkers R, Wang J, Zhang G, Li N, Mao L, Bakker F, Dirks R, Breit T, Gravendeel B, Huits H, Struss D, Swanson-Wagner R, van Leeuwen H, van Ham RC, Fito L, Guignier L, Sevilla M, Ellul P, Ganko E, Kapur A, Reclus E, de Geus B, van de Geest H, Te Lintel Hekkert B, van Haarst J, Smits L, Koops A, Sanchez-Perez G, van Heusden AW, Visser R, Quan Z, Min J, Liao L, Wang X, Wang G, Yue Z, Yang X, Xu N, Schranz E, Smets E, Vos R, Rauwerda J, Ursem R, Schuit C, Kerns M, van den Berg J, Vriezen W, Janssen A, Datema E, Jahrman T, Moquet F, Bonnet J, Peters S: Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole-genome sequencing. Plant J, 80(1):136-148. [PMID=25039268]