Species/Population Samples G2P Pair Model Description Author Journal Year PMID
USDA soybean germplasm 166 16 a mixed linear model (MLM) Identification of QTL with large effect on seed weight in a selective population of soybean with genome-wide association and fixation index analyses Qijian Song et al. BMC Genomics 2017 28701220
soybean lines 200 25 a compressed mixed linear model (CMLM); an enriched compressed mixed linear model (ECMLM); FARMCPU method Loci and candidate genes conferring resistance to soybean cyst nematode HG type 2.5.7 Yingpeng Han and Wenbin Li et al. BMC Genomics 2017 28615053
wild soybeans (Glycine soja) 570 29 a compressed mixed linear model (CMLM) A genome-wide association study of seed composition traits in wild soybean (Glycine soja) Charles Y. Chen and Bao-Hua Song et al. BMC Genomics 2017 28056769
USDA soybean germplasm 3968; 771; 13338; 2075; 2395; 445 22 a mixed linear model (MLM) Characterization of Insect Resistance Loci in the USDA Soybean Germplasm Collection Using Genome-Wide Association Studies Hao-Xun Chang and Glen L. Hartman et al. Front Plant Sci 2017 28555141
wild soybean (Glycine soja) accessions 1032 10 a mixed linear model (MLM) Genetic architecture of wild soybean (Glycine soja) response to soybean cyst nematode (Heterodera glycines) Bao-Hua Song et al. Mol Genet Genomics 2017 28710561
southern Brazil soybean cultivars 169 39 a mixed linear model (Q + K model) A Genome-Wide Association Study for Agronomic Traits in Soybean Using SNP Markers and SNP-Based Haplotype Analysis Contreras-Soto RI et al. PLoS One 2017 28152092
USDA soybean germplasm 466 60 a mixed linear model (MLM); a compressed mixed linear model (CMLM) Main and epistatic loci studies in soybean for Sclerotinia sclerotiorum resistance reveal multiple modes of resistance in multi-environments Asheesh K. Singh et al. Sci Rep 2017 28620159
a cross of cultivar Magellan (susceptible) and PI 567516C (resistant) 241 1 an efficient mixed-model (EMMAX ) Genetic mapping and haplotype analysis of a locus for quantitative resistance to Fusarium graminearum in soybean accession PI 567516C Anne E. Dorrance and Henry T. Nguyen et al. Theor Appl Genet 2017 28275816
plant introductions (PIs) originating from the Republic of Korea (S. Korea) 797 16 a compressed mixed linear model (CMLM) Genome-wide association mapping of partial resistance to Phytophthora sojae in soybean plant introductions from the Republic of Korea Leah K. McHale et al. BMC Genomics 2016 27515508
USDA soybean germplasm 697 10 a mixed linear model (MLM) Genome-wide association and genomic prediction identifies associated loci and predicts the sensitivity of Tobacco ringspot virus in soybean plant introductions Glen L. Hartman et al. BMC Genomics 2016 26924079
wild soybean (Glycine sojaSieb. & Zucc.) accessions 235 10 a compressed mixed linear model (CMLM) Genome-Wide Association Study of Resistance to Soybean Cyst Nematode (Heterodera glycines) HG Type 2.5.7 in Wild Soybean (Glycine soja) Bao-Hua Song et al. Front Plant Sci 2016 27582748
USDA soybean germplasm 80 3 a mixed linear model (MLM) Identification of Multiple Phytotoxins Produced by Fusarium virguliforme Including a Phytotoxic Effector (FvNIS1) Associated With Sudden Death Syndrome Foliar Symptoms Glen L. Hartman et al. Mol Plant Microbe Interact 2016 26646532
Glycine max (L.) Merr: N-1989 panel; B-2000 panel; P-2003 panel 2773; 825; 606 59 logistic regression model; a mixed linear model (MLM); a mixed linear model (MLM) Genome-Wide Association Study of Brown Stem Rot Resistance in Soybean across Multiple Populations Brian W. Diers et al. Plant Genome 2016 27898824
USDA–ARS germplasm 373 74 a mixed linear model (MLM) Identification of Genomic Loci Associated with the Photochemical Reflectance Index by Genome-Wide Association Study in Soybean Felix B. Fritschi et al. Plant Genome 2016 27898827
Northeast china soybean cultivars 146 23 a mixed linear model (MLM) Phenotypic Characterization and Genetic Dissection of Growth Period Traits in Soybean (Glycine max) Using Association Mapping Li-Juan Qiu and Shuming Wang et al. PLoS One 2016 27367048
soybean lines 106 10 an efficient mixed-model (EMMAX ) Genomic-assisted haplotype analysis and the development of high-throughput SNP markers for salinity tolerance in soybean Henry T. Nguyen et al. Sci Rep 2016 26781337
Glycine max (L.) Merr 512 42 a compressed mixed linear model (CMLM) Domestication footprints anchor genomic regions of agronomic importance in soybeans Wenbin Li et al. New Phytol 2015 26479264