Species/Population Samples G2P Pair Model Description Author Journal Year PMID
Indica 469 23 a compressed mixed linear model (CMLM) Genome wide association mapping for grain shape traits in indica rice Xinghua Wei et al. Planta 2016 27198135
O.sativa;Indica; Indica group II ; Tropical Japonica; Temperate Japonica; Aus; Indica group I ; Japonica 529; 203; 105; 44; 91; 46; 98; 135 102 a linear mixed model (LMM) Genetic Architecture of Natural Variation in Rice Chlorophyll Content Revealed by a Genome-Wide Association Study Gongwei Wang et al. Molecular Plant 2015 25747843
hybrid Rice 1495 54 an efficient mixed-model association eXpedited (EMMAX) Genomic analysis of hybrid rice varieties reveals numerous superior alleles that contribute to heterosis Bin Han et al. Nat Commun 2015 25651972
Indica 469 23 a compressed mixed linear model (CMLM) Uncovering novel loci for mesocotyl elongation and shoot length in indica rice through genome-wideassociation mapping Xinghua Wei et al. Planta 2015 26612069
O.sativa; Indica; Japonica 529; 295; 156 6824 a linear mixed model (LMM) Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism Jie Luo;Xingming Lian et al. Nat Genet 2014 24908251
Japonica 168 124 a mixed linear model (MLM+Q+K); a mixed linear modelĀ  (MLM+K) Genome-wide association mapping of root traits in a japonica rice panel Brigitte Courtois et al. PLoS One 2013 24223758
Indica; Indica; Rice; Japonica; Japonica 373; 373; 950; 231; 231 105 Simple Model; a compressed mixed linear model (CMLM); a compressed mixed linear model (CMLM); Simple Model; a compressed mixed linear model (CMLM) Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm Bin Han et al. Nat Genet 2011 22138690
Rice 520 81 Simple model; a compressed mixed linear model (CMLM) Genome-wide association studies of 14 agronomic traits in rice landraces Bin Han et al. Nat Genet 2010 20972439